BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZE09RM1.SCF screened BAC_end
         (927 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1700                                                        1003   0.0  

>3x_Contig1700 
          Length = 16332

 Score = 1003 bits (506), Expect = 0.0
 Identities = 549/558 (98%), Gaps = 4/558 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   cctcgtttctctagtctacctcatatactttctttttttctttttccggttttaatttgg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4744 cctcgtttctctagtctacctcatatactttctttttttctttttccggttttaatttgg 4685

                                                                        
Query: 108  gtttttaagtggatcatgctcgaagctcgaagatgcacacggctgaaccgtgttgaaaga 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4684 gtttttaagtggatcatgctcgaagctcgaagatgcacacggctgaaccgtgttgaaaga 4625

                                                                        
Query: 168  gagagacaagggaaaaaccagtgtagtttccgtagtaccaaggctaagccaaaccggtgg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4624 gagagacaagggaaaaaccagtgtagtttccgtagtaccaaggctaagccaaaccggtgg 4565

                                                                        
Query: 228  ggtactctaaggaatggagggagaaatgggaaaaaaagaaaaacaggggctgaattaggc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4564 ggtactctaaggaatggagggagaaatgggaaaaaaagaaaaacaggggctgaattaggc 4505

                                                                        
Query: 288  aaaataatccactaggaagaatggtagttatgtatgtatttatctgtgtcatcgagaggt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4504 aaaataatccactaggaagaatggtagttatgtatgtatttatctgtgtcatcgagaggt 4445

                                                                        
Query: 348  attttttcaattttaacttcttttttttgtttttccttttgttcctctcagtgtctgtga 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4444 attttttcaattttaacttcttttttttgtttttccttttgttcctctcagtgtctgtga 4385

                                                                        
Query: 408  gggaaaaactgggagcgatgtagtagcttttg-aatacgtaatcttcaagatcccattag 466
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4384 gggaaaaactgggagcgatgtagtagcttttgaaatacgtaatcttcaagatcccattag 4325

                                                                        
Query: 467  ttttttgattatcttatccaagacagggacacaggtatgttttcatttggtgcctgccgc 526
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 4324 -tttttgattatcttatccaagacagggacacaggtatg-tttcatttggtgcctgcggc 4267

                                                                        
Query: 527  actaattttttcttgggttacttgtatttcaatcttttgactattaatgcttttgctatc 586
            ||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 4266 actaa-tttttcttggtttacttgtatttcagtcttttgactattaatgcttctgctatc 4208

                              
Query: 587  ctgctgggccttaaattt 604
            ||||||||||| ||||||
Sbjct: 4207 ctgctgggcctaaaattt 4190


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9893
Number of Sequences: 1807
Number of extensions: 9893
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)