BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE10FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1124 0.0
>3x_Contig1451
Length = 8346
Score = 1124 bits (567), Expect = 0.0
Identities = 645/665 (96%), Gaps = 5/665 (0%)
Strand = Plus / Minus
Query: 85 ttagatcctacctaacgttacttaaaattcatattctaatattgaatgctgaacgacagg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4830 ttagatcctacctaacgttacttaaaattcatattctaatattgaatgctgaacgacagg 4771
Query: 145 atcttcgttgtctagaacagaaatgatgtcttctttaatttctggttctggaatggactc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 atcttcgttgtctagaacagaaatgatgtcttctttaatttctggttctggaatggactc 4711
Query: 205 actcgaatgatgataaagtatcaacaatgatggcaaggttttgccatatgtgcatgttac 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 actcgaatgatgataaagtatcaacaatgatggcaaggttttgccatatgtgcatgttac 4651
Query: 265 aaattgtaccttatcgccagattctgacaacagatcagggaattccttttctataccctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 aaattgtaccttatcgccagattctgacaacagatcagggaattccttttctataccctt 4591
Query: 325 aatggcgactttcttggctatgacatcatgtggataagagtcttttgtgttctctaaaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 aatggcgactttcttggctatgacatcatgtggataagagtcttttgtgttctctaaaag 4531
Query: 385 caccaatgccatacttgctgcaacagaatctttaccatttaacttaacatattttgtgag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 caccaatgccatacttgctgcaacagaatctttaccatttaacttaacatattttgtgag 4471
Query: 445 tgcgcccagagccaaagctagcttaccagttctcaaatggaattcanattccagcanatg 504
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 4470 tgcgcccagagccaaagctagcttaccagttctcaaatggaattcaaattccagcaaatg 4411
Query: 505 tctttctcgtatcatcagtggtttgggataaatatagtttcaaaaattgattctcgaata 564
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 tctt-ctcgtatcatcagtggtttgggataaatatagtttcaaaaattgattctcgaata 4352
Query: 565 attccaaaagatttggatcattgagtaaagtttcaccaaatggatccttgtcatcaaagt 624
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4351 attccaaaggatttggatcattgagtaaagtttcaccaaatggatccttgtcatcaaggt 4292
Query: 625 aggcaagatacttggccttttcttcttccctctttttaatcaaagcaacaaccttctttt 684
||||||||||||||||||||||||||||| |||||||| |||||||| || | |||||||
Sbjct: 4291 aggcaagatacttggccttttcttcttccttctttttattcaaagcagcagc-ttctttt 4233
Query: 685 tgggcctttttggttggccttctttttgaaagaactggcaataatgccctttgttcaact 744
| |||||||||| |||| |||||| |||| ||||||| || | |||| ||| ||||||||
Sbjct: 4232 ttggcctttttg-ttggtcttcttcttgatagaactgtca-tcatgctctt-gttcaact 4176
Query: 745 gatgc 749
|||||
Sbjct: 4175 gatgc 4171
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7780
Number of Sequences: 1807
Number of extensions: 7780
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)