BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE10RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1205 0.0
>3x_Contig1640
Length = 15521
Score = 1205 bits (608), Expect = 0.0
Identities = 693/718 (96%), Gaps = 3/718 (0%)
Strand = Plus / Plus
Query: 48 ttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtagccc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11345 ttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtagccc 11404
Query: 108 tacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgttat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11405 tacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgttat 11464
Query: 168 ttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagacaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11465 ttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagacaaa 11524
Query: 228 cgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaacta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11525 cgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaacta 11584
Query: 288 gttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctcgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11585 gttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctcgaa 11644
Query: 348 aggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgtgac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11645 aggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgtgac 11704
Query: 408 ccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttggcag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11705 ccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttggcag 11764
Query: 468 agaaaaactcggatcccttcactgcaaagtttatacacanaaccatattccctcatttgt 527
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11765 agaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatttgt 11824
Query: 528 cccaaacttcgttttacgatggacaggccatggatactattcatagctgaaccttgatac 587
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11825 cccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaatac 11884
Query: 588 agtttacaggaattataagcttttgcaaaaagatttcaacacggtttaattacacacttg 647
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 11885 agtttacaggaa-tataagcttttgcaaaaagagttcaacacgg-ttaattacacacttg 11942
Query: 648 aacgagatgttgattgcactggttagggaagcatttttaactttttttggacagcattcc 707
|||||||||||||| ||||||| || |||||||||| ||||||| || | ||||||||
Sbjct: 11943 aacgagatgttgatggcactgg-taaggaagcatttctaactttcttggaccagcattcg 12001
Query: 708 naacaaaaaggtccaattgtcggaatattggaaagttttccacaattcgttcccttag 765
| ||||| |||||||||||||||||||| | | | | ||||||||||| ||||||||
Sbjct: 12002 aagcaaaagggtccaattgtcggaatatttggagggtatccacaattcgctcccttag 12059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6432
Number of Sequences: 1807
Number of extensions: 6432
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)