BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE11FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1243 0.0
>3x_Contig1568
Length = 12470
Score = 1243 bits (627), Expect = 0.0
Identities = 662/670 (98%), Gaps = 3/670 (0%)
Strand = Plus / Plus
Query: 85 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 7824
Query: 145 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 7884
Query: 205 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 7944
Query: 265 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7945 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 8004
Query: 325 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8005 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 8064
Query: 385 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttaggccgatct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8065 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttaggccgatct 8124
Query: 445 ctatatcggacgagaaggatcttagtgtaccctttttagtggattggatactcgcggtaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8125 ctatatcggacgagaaggatcttagtgtaccctttttagtggattggatactcgcggtaa 8184
Query: 505 tattatgtatattggcgccattttacttaggtagaattctagcatgggtgctgacaaagg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8185 tattatgtatattggcgccattttacttaggtagaattctagcatgggtgctgacaaagg 8244
Query: 565 ggttggacttctgggtatggcgtcagtataagattaaaataaacctacaatcaataaagg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8245 ggttggacttctgggtatggcgtcagtataagattaaaataaacctacaatcaataaagg 8304
Query: 625 tgtccctttctatgtggacgaatctttcttcaagaatttaacagtagtctcgaatgattt 684
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8305 tgt-cctttctaggtggacgaatc-ttcttcaagaatttaacagtagtctcgaatgattt 8362
Query: 685 tacattctcatttttagagggttagttttacctggagattttggttattgcatacaagga 744
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 8363 tacaatctcatttttagaggg-tagttttacctggagatattggttattgcatacaagga 8421
Query: 745 tttgcgnaat 754
|| ||| |||
Sbjct: 8422 ttcgcggaat 8431
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8950
Number of Sequences: 1807
Number of extensions: 8950
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)