BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE12FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig849 1021 0.0
>3x_Contig849
Length = 3479
Score = 1021 bits (515), Expect = 0.0
Identities = 581/602 (96%), Gaps = 2/602 (0%)
Strand = Plus / Plus
Query: 85 tagatcagcaatatgtttcaagttaatcttttctggcgtctcagttctgttaatattttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 tagatcagcaatatgtttcaagttaatcttttctggcgtctcagttctgttaatattttt 2878
Query: 145 ttttggttagtatcgttgcaatttatccgccgaaacttggaaatatagaataaggtaaaa 204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2879 ttttggttagtatcgttgcaatttagccgccgaaacttggaaatatagaataaggtaaaa 2938
Query: 205 catacatatgtattttgtgagccaacgtctgaaatttcttctctaattcctggtaagata 264
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 catacatatgtaattcgtgagccaacgtctgaaatttcttctctaattcctggtaagata 2998
Query: 265 ccttaagggcagcgagtcgctgctgtttacgatttaaacgatcctcaacgcccattatgt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ccttaagggcagcgagtcgctgctgtttacgatttaaacgatcctcaacgcccattatgt 3058
Query: 325 tactctttgccctttttctgtgtatatagttcctcatctgtagatttcaatgttgtttgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 tactctttgccctttttctgtgtatatagttcctcatctgtagatttcaatgttgtttgt 3118
Query: 385 agaagataaatatcagaaaatgatatggagaaattaataatggaaacataatttgcatta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 agaagataaatatcagaaaatgatatggagaaattaataatggaaacataatttgcatta 3178
Query: 445 atacataaagcccatcagacaatgctgatagaataatggtatagatatatatctggaaga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 atacataaagcccatcagacaatgctgatagaataatggtatagatatatatctggaaga 3238
Query: 505 gaattaaatgctaaacataggcgtgtatatatactaattcatgttgaagtttcaggtcga 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3239 gaattaaatgctaaacataggcgtgtatatatactaattcatgttgaagtttcagggcga 3298
Query: 565 gttatatgactgactgtctgtagaactagcgagtcttgattatatcagccgcgatcaaag 624
|| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |
Sbjct: 3299 gtaatatgactgactgtctgtagaactagcgagtcttgattataccagcggcgattaagg 3358
Query: 625 ttttgattcttctgaagacgtctgggttttttaattgtgttcctgttaaacagcaggatt 684
||| ||| | ||||||||||||||||| | | ||||||||| | || ||||||||||
Sbjct: 3359 tttgaattttcttgaagacgtctgggtttctca--tgtgttcctttaaagcagcaggatt 3416
Query: 685 tt 686
||
Sbjct: 3417 tt 3418
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7759
Number of Sequences: 1807
Number of extensions: 7759
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)