BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE12RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1334 0.0
>3x_Contig1708
Length = 19451
Score = 1334 bits (673), Expect = 0.0
Identities = 760/785 (96%), Gaps = 3/785 (0%)
Strand = Plus / Minus
Query: 46 cttataaatcaactagtttatcattccatattagaagaatgtgaaaacagctacaggtat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9853 cttataaatcaactagtttatcattccatattagaagaatgtgaaaacagctacaggtat 9794
Query: 106 ggacttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 ggacttttccagatgagcccagatgatgtatcaaaaaatatcccttggttcacaacaaat 9734
Query: 166 agcataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 agcataatagaaaatcttaatgacatcttcttcttgttaaggcatgcctctgaagatctt 9674
Query: 226 gccgttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 gccgttgtgtcagaatttgtagaggaattactgctattggttaagtctctattttatatg 9614
Query: 286 gtcaggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gtcaggcaaataaccatgtggattgatgcaaatgccattactgattctagttataaacag 9554
Query: 346 tttttcgaagaaaatcatttactttggaatagggtccttatggatgttaacaggtctcat 405
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9553 tttttcgaagaaaatcatttactttggaatagggtccttagggatgttaacaggtctcag 9494
Query: 406 gattcaattctaatcacagatttttaccaagactttgaaggcttagttgaaactttgcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 gattcaattctaatcacagatttttaccaagactttgaaggcttagttgaaactttgcaa 9434
Query: 466 tctctgccaaaaattaccgcattctctctatacgatgaattcttccagatatacggatac 525
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9433 tctctgccaaaaattaccgcattctctctatacgatgaattcttccagaaatacggatac 9374
Query: 526 gactttgcaaaatccttattttcctactatatcaaggaagggctatgggatgatctttac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9373 gactttgcaaaatccttattttcctactatatcaaggaagggctatgggatgatctttac 9314
Query: 586 gaatcgtttggtgatacccattcagaatatttggaccagttcttatgagaatgtcccgag 645
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9313 gaatcgtttggtgaaacccattcagaatatttggaccagttcttaggagaatgtcccgag 9254
Query: 646 tatggcaaagttaaatggattggaaacatatattgccataaatacgacgaagcaacttca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9253 tatggcaaagttaaatggattggaaacatatattgccataaatacgacgaagcaactaca 9194
Query: 706 actttgttgagtattttttactggaactccaatcctggggtcaaaatttgaaacaaagac 765
||||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 9193 actttgttgagta-tttctactggaact-caatcgctgggtcaagatttgaaacaaagac 9136
Query: 766 agcccaaattgatttttggccaattaacagcttttgcccccggaagttcaaaattttgaa 825
|| | |||||| | ||| | ||||||||||| ||| || ||||||||||| || |||||
Sbjct: 9135 aggcacaattgagtattgccaaattaacagctcttg-ccgcggaagttcaagatcttgaa 9077
Query: 826 aagct 830
|||||
Sbjct: 9076 aagct 9072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,280
Number of Sequences: 1807
Number of extensions: 13280
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)