BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF01FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1386 0.0
>3x_Contig1502
Length = 14970
Score = 1386 bits (699), Expect = 0.0
Identities = 740/751 (98%), Gaps = 2/751 (0%)
Strand = Plus / Plus
Query: 87 tggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatcctggagaac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 tggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatcctggagaac 9546
Query: 147 aaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccactcaactctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547 aaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccactcaactctc 9606
Query: 207 tgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatacccacaagga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9607 tgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatacccacaagga 9666
Query: 267 agtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattagaaaccctga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9667 agtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattagaaaccctga 9726
Query: 327 aatccagaaattggttcctactttgattaatgctattggtgatccaacaaaatacacaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9727 aatccagaaattggttcctactttgattaatgctattggtgatccaacaaaatacacaga 9786
Query: 387 agatgcactagatgccttgattcaaacacagtttgttcattacatcgatggtccttcatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9787 agatgcactagatgccttgattcaaacacagtttgttcattacatcgatggtccttcatt 9846
Query: 447 agcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaacactaagag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9847 agcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaacactaagag 9906
Query: 507 gaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagagatttggttcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9907 gaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagagatttggttcc 9966
Query: 567 ttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgtgcctaatac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9967 ttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgtgcctaatac 10026
Query: 627 aagagccacagccgcacgtgcattatgtgccttagtcgatagattatgtgaagaacagtt 686
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct: 10027 aagagccacagccgcacgtgcattaggtgccttagtcgaaagattaggtgaagaacagtt 10086
Query: 687 cccagacttgattcctcgtttgatgtccactttaagcgattatactaaatcaggggatcg 746
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 10087 cccagacttgattcctcgtttgatgtccactttaagcgataatactaaatcaggggatcg 10146
Query: 747 tatgggcttagcacaagcattggcagaagttatctttgggattaggtctttccaagttgg 806
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct: 10147 tatgggctcagcacaagcattggcagaagttatctct-ggattaggtctttccaagtt-g 10204
Query: 807 gaagagttgttaccacctttcctttcaggtg 837
||||||||||||||| || |||| |||||||
Sbjct: 10205 gaagagttgttaccaactatcctctcaggtg 10235
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5715
Number of Sequences: 1807
Number of extensions: 5715
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)