BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF01RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1457 0.0
>3x_Contig917
Length = 3433
Score = 1457 bits (735), Expect = 0.0
Identities = 821/845 (97%), Gaps = 4/845 (0%)
Strand = Plus / Minus
Query: 43 cttgggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 cttgggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtga 1846
Query: 103 tattttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 tattttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaa 1786
Query: 163 tgaaacacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 tgaaacacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacg 1726
Query: 223 acgggttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 acgggttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagta 1666
Query: 283 cgggataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 cgggataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataa 1606
Query: 343 taacaagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 taacaagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcc 1546
Query: 403 caggatgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 caggatgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggcc 1486
Query: 463 aattgacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtcttt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 aattgacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtcttt 1426
Query: 523 catgtgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 catgtgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagt 1366
Query: 583 gaagagcggatcgacatagcgcattagatagcatttgggagatcagttgaagttgcaatc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 gaagagcggatcgacatagcgcattagatagcatttgggagatcagttgaagttgcaatc 1306
Query: 643 gatcagatagaaatncagttttctttaaattccacagtcaattccaaccctagatttttc 702
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1305 gatcagatagaaatccagtttcctttaaatcccacagtcaattccaaccctagatttttc 1246
Query: 703 agtagtgcagagtcatctaatgaaaccccttcttctttctttnctttctacgtttcccgc 762
||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||
Sbjct: 1245 agtagtgcagagtcatctaatgaaacctttctttctttcttt-ctttctacgttt-ccgc 1188
Query: 763 ttccattcgtagctaacctgggatctcattcaattctnccgaatttcaattctgcttgta 822
|||||||||||||| |||| |||||||||||||| || | | |||||||||||||| |||
Sbjct: 1187 ttccattcgtagctcaccttggatctcattcaatcctccag-atttcaattctgctagta 1129
Query: 823 agtaaacagagaaataatttttaaacggtacaagttccttattaagacactttcatcatg 882
||||||||||||| ||| ||||||||||||||||| | ||| ||||| ||| |||||||
Sbjct: 1128 agtaaacagagaagtaa-ttttaaacggtacaagtactctatcaagacgcttccatcatg 1070
Query: 883 cttgg 887
|||||
Sbjct: 1069 cttgg 1065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8248
Number of Sequences: 1807
Number of extensions: 8248
Number of successful extensions: 187
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)