BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF02RM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1106 0.0
>3x_Contig1572
Length = 12810
Score = 1106 bits (558), Expect = 0.0
Identities = 612/624 (98%), Gaps = 5/624 (0%)
Strand = Plus / Plus
Query: 49 atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccattttcctca 108
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5000 atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccattt-cctca 5058
Query: 109 cacaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5059 cacaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtc 5118
Query: 169 agattagatccgcttatctccggtggtggtcaagaaagaggtttacgttctggtacattg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5119 agattagatccgcttatctccggtggtggtcaagaaagaggtttacgttctggtacattg 5178
Query: 229 gctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5179 gctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgag 5238
Query: 289 aacgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5239 aacgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctatt 5298
Query: 349 gaccatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5299 gaccatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttca 5358
Query: 409 ttcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359 ttcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttct 5418
Query: 469 ggttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgngtaaa 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5419 ggttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgggtaaa 5478
Query: 529 gatgatgctttagcacactcttncatcagattcggtattggtagattcaccactgatgaa 588
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5479 gatgatgctttagcacactcttccatcagattcggtattggtagattcaccactgatgaa 5538
Query: 589 gaaaatgattacgttattcaagctattacgggaaagagttgattttcctaagagagtttg 648
|||| |||||||||||| | ||||| || |||||||||||| ||||||||||||| |||
Sbjct: 5539 gaaattgattacgttatcaaggctatcac-ggaaagagttga-tttcctaagagag-ttg 5595
Query: 649 tccccattatggggagatggtcaa 672
|||||||||| |||||||||||||
Sbjct: 5596 tccccattat-gggagatggtcaa 5618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,945
Number of Sequences: 1807
Number of extensions: 12945
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)