BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF03FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1532 0.0
>3x_Contig1673
Length = 13723
Score = 1532 bits (773), Expect = 0.0
Identities = 834/853 (97%), Gaps = 1/853 (0%)
Strand = Plus / Minus
Query: 85 ctgctggccaaagaagtggtagagcagggcgtacagggcctggtcattgttatcgtttat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6065 ctgctggccaaagaagtggtagagcagggcgtacagggcctggtcattgttatcgtttat 6006
Query: 145 actcctctgcagttttcgaaagagattttgagcagttttctaagcctgaaattttaagaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6005 actcctctgcagttttcgaaagagattttgagcagttttctaagcctgaaattttaagaa 5946
Query: 205 tgcctgtggagagtatagttttgcaaatgaagagcatggctgttcataatattgtgaatt 264
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5945 tgcctgtggagagtatagttttgcaaatgaagagcatggctgttcataataaaacgaatt 5886
Query: 265 ttccattccctaccccacccgaaagaccagctttgatgaagtcaataaagctcttacaac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5885 ttccattccctaccccacccgaaagaccagctttgatgaagtcaataaagctcttacaac 5826
Query: 325 acctaggtgcactcgacagtaatgaaagaatcactgatgatggtaaagcaatgagtttgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5825 acctaggtgcactcgacagtaatgaaagaatcactgatgatggtaaagcaatgagtttgt 5766
Query: 385 ttccgctaagtccaagattttctaaaatgctgcttgttggtaatgaaagcgactgtttga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5765 ttccgctaagtccaagattttctaaaatgctgcttgttggtaatgaaagcgactgtttga 5706
Query: 445 aatatgttgttaccattgtcagtgccctttcagtaggtgagccgtttttatctgaacaag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5705 aatatgttgttaccattgtcagtgccctttcagtaggtgagccgtttttatctgaacaag 5646
Query: 505 agcttggtatcatggatactgtgcccaagacacaagatgaaggacaattagatgactatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5645 agcttggtatcatggatactgtgcccaagacacaagatgaaggacaattagatgactatc 5586
Query: 565 ctgatcacgaagctgaggaaagaaaaaggctattgcgctccaagtatgttaaaagcaaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5585 ctgatcacgaagctgaggaaagaaaaaggctattgcgctccaagtatgttaaaagcaaaa 5526
Query: 625 ttagatttagtaagcttgataaattcagtgatgttttccgtcttttaagtgcagtatctg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5525 ttagatttagtaagcttgataaattcagtgatgttttccgtcttttaagtgcagtatctg 5466
Query: 685 cgttggatttcattccaaatgatcagcacagttctttcatggaaaaaaaattcttaaggg 744
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5465 cgttggatttcattccaaaggatcagcacagttctttcatggaaaaaaatttcttaaggg 5406
Query: 745 caaaaaccgtagaggagattatgaagttgagaaagcaggtgatgttcatcatcaggtcag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 caaaaaccgtagaggagattatgaagttgagaaagcaggtgatgttcatcatcaggtcag 5346
Query: 805 ttacttcgagagataatgtacctggaaat-tttaagacgaagacttgaagagctcgatcc 863
||||||||||||| |||||| ||| |||| || |||||||||||||||||||||||||||
Sbjct: 5345 ttacttcgagagaaaatgtagctgtaaatgttaaagacgaagacttgaagagctcgatcc 5286
Query: 864 ccaccgatgttccaatcaaattactcaagccaatgatcccaccattatttatcgaccatg 923
|||||||||||| ||||||||||||||||| ||||||| || || |||||||||||| |
Sbjct: 5285 ccaccgatgttcaaatcaaattactcaagcaaatgatcacagcaggatttatcgaccagg 5226
Query: 924 tgggcgttcgcgc 936
||| |||||||||
Sbjct: 5225 tggccgttcgcgc 5213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6738
Number of Sequences: 1807
Number of extensions: 6738
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)