BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZF04RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig922                                                          674   0.0  
3x_Contig1446                                                         168   1e-41
3x_Contig1396                                                         159   1e-38
3x_Contig631                                                          159   1e-38
3x_Contig904                                                          155   2e-37

>3x_Contig922 
          Length = 4170

 Score =  674 bits (340), Expect = 0.0
 Identities = 381/388 (98%), Gaps = 5/388 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   tctctccagagaaaactactgcaatcattcggtgaagatctttcagagatagacgccaaa 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  tctctccagagaaaactactgcaatcattcggtgaagatctttcagagatagacgccaaa 1014

                                                                        
Query: 107  ctagaattgcttaactgtcatcccttaatttttgaaatatagatcacctcaacgattatc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctagaattgcttaactgtcatcccttaatttttgaaatatagatcacctcaacgattatc 1074

                                                                        
Query: 167  aaatcttatatccaatataagatattagcatatgctagataagaatatatattaccatcc 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 aaatcttatatccaatataagatattagcatatgctagataagaatatatattaccatcc 1134

                                                                        
Query: 227  tgcattttaatccattacatgacgtccggagatacgtagatccatgtataaggaatagcc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 tgcattttaatccattacatgacgtccggagatacgtagatccatgtataaggaatagcc 1194

                                                                        
Query: 287  tcatatgtgatggctctatcaggttatagtgcacatctaattgtcatattaacaacaaca 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 tcatatgtgatggctctatcaggttatagtgcacatctaattgtcatattaacaacaaca 1254

                                                                        
Query: 347  tgactccgt-ggccaagct-ggttaaggcgtg-cg-actgttaatcgcaagatcgag-ag 401
            ||||||||| ||||||||| ||||| |||||| || ||||||||||||||||||||| ||
Sbjct: 1255 tgactccgtgggccaagctgggttagggcgtgacgcactgttaatcgcaagatcgagaag 1314

                                        
Query: 402  ttcaatcctctccggggtcgtttatttt 429
            ||||||||||||||||||||||| ||||
Sbjct: 1315 ttcaatcctctccggggtcgtttttttt 1342


>3x_Contig1446 
          Length = 10598

 Score =  168 bits (85), Expect = 1e-41
 Identities = 88/89 (98%)
 Strand = Plus / Minus

                                                                        
Query: 343  aacatgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagt 402
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2545 aacacgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagt 2486

                                         
Query: 403  tcaatcctctccggggtcgtttatttttt 431
            |||||||||||||||||||||||||||||
Sbjct: 2485 tcaatcctctccggggtcgtttatttttt 2457


>3x_Contig1396 
          Length = 8488

 Score =  159 bits (80), Expect = 1e-38
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                        
Query: 348  gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7779 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 7838

                                    
Query: 408  cctctccggggtcgtttatttttt 431
            ||||||||||||||||| ||||||
Sbjct: 7839 cctctccggggtcgtttttttttt 7862


>3x_Contig631 
          Length = 2339

 Score =  159 bits (80), Expect = 1e-38
 Identities = 83/84 (98%)
 Strand = Plus / Plus

                                                                        
Query: 348  gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 gactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaat 1510

                                    
Query: 408  cctctccggggtcgtttatttttt 431
            |||||||||||||||||| |||||
Sbjct: 1511 cctctccggggtcgtttaattttt 1534


>3x_Contig904 
          Length = 3319

 Score =  155 bits (78), Expect = 2e-37
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                        
Query: 347  tgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710 tgactccgtggccaagctggttaaggcgtgcgactgttaatcgcaagatcgagagttcaa 1651

                              
Query: 407  tcctctccggggtcgttt 424
            ||||||||||||||||||
Sbjct: 1650 tcctctccggggtcgttt 1633


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,611
Number of Sequences: 1807
Number of extensions: 13611
Number of successful extensions: 165
Number of sequences better than 1.0e-20: 5
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)