BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1314 0.0
>3x_Contig1762
Length = 22098
Score = 1314 bits (663), Expect = 0.0
Identities = 715/731 (97%), Gaps = 1/731 (0%)
Strand = Plus / Plus
Query: 87 cgaaaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggttagaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13671 cgaaaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggttagaaa 13730
Query: 147 attggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaaggca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731 attggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaaggca 13790
Query: 207 aggaccatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggattttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13791 aggaccatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggattttt 13850
Query: 267 tcgattacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaagttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13851 tcgattacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaagttg 13910
Query: 327 tatttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaattaaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13911 tatttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaattaaaca 13970
Query: 387 acgtaatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtatttta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13971 acgtaatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtatttta 14030
Query: 447 tgaaattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggttgtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14031 tgaaattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggttgtg 14090
Query: 507 tcatcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaatatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14091 tcatcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaatatga 14150
Query: 567 agaactgcaaccagggtggatgttcaagatgtaacgatggggatgataagtcgttgcata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14151 agaactgcaaccagggtggatgttcaagatgtaacgatggggatgataagtcgttgcata 14210
Query: 627 cttgtctatgcttgcatgctgaagataacgcgttgttagaagcggttagagacagggtcg 686
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 14211 cttgtctatgcttgcatgctgaagaaaacgcgttgttagaagcgggtagagacagggtcg 14270
Query: 687 ggccaaacgctattatatactgcgatacatgtccctgcctgacatgttcagtgaagatcg 746
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14271 ggccaaacgctatattatactgcgatacatgtccctgcctgacatgttcagtgaagatcg 14330
Query: 747 gtcaaacaggcttaaaagaggtagttatttaccattcc-atagaatggacaaacaaaatt 805
|||||||||| | |||||||||||| || |||||| ||||||||||| |||||| |
Sbjct: 14331 ttcaaacaggcattaaagaggtagtttattcacattcctatagaatggacgaacaaagtc 14390
Query: 806 tgaagtttcta 816
||||| |||||
Sbjct: 14391 tgaaggttcta 14401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5224
Number of Sequences: 1807
Number of extensions: 5224
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)