BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF05RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 1439 0.0
>3x_Contig1702
Length = 15454
Score = 1439 bits (726), Expect = 0.0
Identities = 789/806 (97%), Gaps = 3/806 (0%)
Strand = Plus / Plus
Query: 45 aagctttcagtggaaacattgaccgtaaagagtatagaggaacaacatccgctggaatct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 aagctttcagtggaaacattgaccgtaaagagtatagaggaacaacatccgctggaatct 2492
Query: 105 agaaaggcctggcaacttgtagctgctgcaacgaaatctggtaattttgatctgattcat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 agaaaggcctggcaacttgtagctgctgcaacgaaatctggtaattttgatctgattcat 2552
Query: 165 caagaaaaaactaagctcgaagaaaagcaaagagaacttagaagggaggaagaagctaag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 caagaaaaaactaagctcgaagaaaagcaaagagaacttagaagggaggaagaagctaag 2612
Query: 225 ggaattgattggcaaagaagatggttcaaggattacgattattccgaaaaagatcctgac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 ggaattgattggcaaagaagatggttcaaggattacgattattccgaaaaagatcctgac 2672
Query: 285 acctttaccaaattagccatcttggcaaatatatcagtgaagaacttacctagtggaaca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 acctttaccaaattagccatcttggcaaatatatcagtgaagaacttacctagtggaaca 2732
Query: 345 ctggtttcggaagaaaagaaggatgcaaatatgttgcattggagattcgatcacgaaagc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 ctggtttcggaagaaaagaaggatgcaaatatgttgcattggagattcgatcacgaaagc 2792
Query: 405 tgggataaggaaacagaaattaaactttgagaataattcacgatgatgataaagtgtgta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 tgggataaggaaacagaaattaaactttgagaataattcacgatgatgataaagtgtgta 2852
Query: 465 tttcattggttgtaaatctcttttgattcattatcaacttcagttggattatactacata 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 tttcattggttgtaaatctcttttgattcattatcaacttcagttggattatactacata 2912
Query: 525 actacgtaagcgctaaatgttaaataaattattagtcttttaacatatgcaaagaagaga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 actacgtaagcgctaaatgttaaataaattattagtcttttaacatatgcaaagaagaga 2972
Query: 585 tccttgtttaaagtagtaccatctattatgtatgtacttatgatttaggtgtattaaatt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 tccttgtttaaagtagtaccatctattatgtatgtacttatgatttaggtgtattaaatt 3032
Query: 645 gcaaataatgttacatcaatcttcattataattctcgagattcaaactaaccattctaga 704
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3033 gcaaataatgttacatcaatcttcatcataattctcgagattcaaactaaccattctaga 3092
Query: 705 agagttatcttcttgttcccggaatattccaactagtggattgggattttttaaacattg 764
||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
Sbjct: 3093 agagttatcttcttgttcccggaatataccaactagt-gattgggatttttcaaacatag 3151
Query: 765 catttcttcaacgatttaaccattgactgggcctttgggattaccattcccgttaatata 824
|| |||||||||||| |||| || ||||||| ||| |||||| |||||| ||||||||
Sbjct: 3152 ca-ttcttcaacgatataacgatgaactgggcattt-ggattagcattccgcttaatata 3209
Query: 825 atgggcttttctttcaacattagtga 850
||| ||| ||||||||||||||||||
Sbjct: 3210 atgtgctattctttcaacattagtga 3235
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8625
Number of Sequences: 1807
Number of extensions: 8625
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)