BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF06RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1323 1168 0.0
>3x_Contig1323
Length = 7472
Score = 1168 bits (589), Expect = 0.0
Identities = 641/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Plus
Query: 42 cttaacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgat 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3561 cttaacatttatgatctgtcagctgacaaagtctctcaaattgattctacgagtgatgat 3620
Query: 102 tcgctcatcactgaagt-acatgggtcggaaaccatgaaattattgcaaaagtttcagat 160
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3621 tcgctcatcactgaagtcacatgggtcggaaaccatgaaattattgcaaaagtttcagat 3680
Query: 161 cgttcttcatacattttgaccgtcatcatggtagatgccgcggatggatcgcgtattgaa 220
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3681 cgttcttcagacattttgaccgtcatcatggtagatgccgcggatggatcgcgtagtgaa 3740
Query: 221 gtgtctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccactttt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3741 gtgtctcgaatagaagaaagcgatggtgggtggtgggagatcactcacaagaccactttt 3800
Query: 281 gttcctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggtt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3801 gttcctaaagataagtcaagatcaagatcatataatggttacattgacttggtaccggtt 3860
Query: 341 gatggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgtt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3861 gatggctacaatcatctcgtatactttacaacaaacgtaaccacagagattccaagtgtt 3920
Query: 401 gtcttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3921 gtcttaacctcaggtgaatgggaagtcgtggatggaccagctgctttcgatgaagagttc 3980
Query: 461 aacaatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3981 aacaatgtatatttcattgctactaaaaagtcatcgacggaaagacatttatattacgtc 4040
Query: 521 aatttataaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactat 580
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4041 aatttagaaaggccacagaaggtttatgctgttaccgatgaaaggttaaatgggtactat 4100
Query: 581 tctgcttctttctcagcaagcgcaagattcttgcta-tggactactta-gaccagatgtc 638
|||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct: 4101 tctgcttctttctcagcaggcgcaagattcttgctattgaactacttaggaccagatgtc 4160
Query: 639 ccttatc-aaagatatttgatttaaagtcagacacttaagattagaatattcg 690
||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 4161 ccttatcaaaagataattgatttaaagtcagacactaaagataagaatattcg 4213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7951
Number of Sequences: 1807
Number of extensions: 7951
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)