BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF07FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1294 0.0
>3x_Contig1414
Length = 7923
Score = 1294 bits (653), Expect = 0.0
Identities = 794/829 (95%), Gaps = 9/829 (1%)
Strand = Plus / Plus
Query: 92 caaagacttcaatgattcagaagtggacttgagagattcagagaaatctactggcatgta 151
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1529 caaagacttcaatgat-cagaagtgg-cttgagagattcagagaaatctactggcatgta 1586
Query: 152 tggctggttcttgaaggatccagaaactcatagctacacgctagaaccagaactgttaga 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 tggctggttcttgaaggatccagaaactcatagctacacgctagaaccagaactgttaga 1646
Query: 212 atatctggcacaatatattaaagaaaacggtccctttgatggaattggtggattcagtca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 atatctggcacaatatattaaagaaaacggtccctttgatggaattggtggattcagtca 1706
Query: 272 aggtgctggactagcagggtatctatccactgatttatggtccattctgccgctaaacaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 aggtgctggactagcagggtatctatccactgatttatggtccattctgccgctaaacaa 1766
Query: 332 ggaggaacaaccgcctttcaaattcgctatgtacttctccggtttcaaattcgaaccaga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 ggaggaacaaccgcctttcaaattcgctatgtacttctccggtttcaaattcgaaccaga 1826
Query: 392 acagttccaagctccgtacgagacacatccaatccaattaaaaactctacatattgtggg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 acagttccaagctccgtacgagacacatccaatccaattaaaaactctacatattgtggg 1886
Query: 452 ggaactagattccctcgttactgaagaaaggtcaatgaagttgttcgaagcgtgtgatcc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 ggaactagattccctcgttactgaagaaaggtcaatgaagttgttcgaagcgtgtgatcc 1946
Query: 512 ttcaacacgcactatggtaaagcattccggtggtcactacattcctaatactaaaccgtt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 ttcaacacgcactatggtaaagcattccggtggtcactacattcctaatactaaaccgtt 2006
Query: 572 tatcaatatgattttgagttggctgcatgcacaagcagatgaaaatttaaggggactttc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2007 tatcaatatgattttgagttggctgcatgcacaagcagatgaaaatttaagggaactttc 2066
Query: 632 gggttctgaagaatctgctatgaaaaacaccgttaacaactccgatccacaattggacga 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 gggttctgaagaatctgctatgaaaaacaccgttaacaactccgatccacaattggacga 2126
Query: 692 tgatttattagatatgattgactcttttcggtaaaatcta-gcccaaatctttgccttgt 750
|||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||
Sbjct: 2127 tgatttattagatatgattgactc-tttcggtaagatctaggcccaattctttgccttgt 2185
Query: 751 atattcttcactacatattttggtaaat-agaagaataagaaaagtttcta-taactaaa 808
|||||||||||||||||||||| ||||| |||||| ||||||| ||||| |||||| |
Sbjct: 2186 atattcttcactacatattttgttaaataagaagataaagaaaatgttctagtaactaga 2245
Query: 809 gctagcctctattttttgaagaaagaa-attacctaacttttcctatttttccgaaagaa 867
|||||| ||| | ||||||||| ||| ||||||||||||||| |||| | ||| || |
Sbjct: 2246 gctagctcctaatatttgaagaaggaatattacctaacttttcgtattctcccgtaatga 2305
Query: 868 gaa-tacattttttttat-aattccctttaacaacggaaaaccccttga 914
||| ||||||| | |||| | ||||||||| |||| ||||| |||||||
Sbjct: 2306 gaattacatttctcttatcatttccctttatcaactgaaaaacccttga 2354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7067
Number of Sequences: 1807
Number of extensions: 7067
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)