BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF07RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig724 936 0.0
>3x_Contig724
Length = 2144
Score = 936 bits (472), Expect = 0.0
Identities = 536/552 (97%), Gaps = 4/552 (0%)
Strand = Plus / Minus
Query: 45 aactcttcttttaaagtactctaacgcagtaataccaggagtcaattcccctgcctttaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aactcttcttttaaagtactctaacgcagtaataccaggagtcaattcccctgcctttaa 667
Query: 105 aagatatggcctcgtttcatggatgggctgaccacaattaatcggtaatcgttgacgatt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagatatggcctcgtttcatggatgggctgaccacaattaatcggtaatcgttgacgatt 607
Query: 165 gacaaatttcttcaaccccgattgaacatgaaagttccggcatataattgaagtcaaaat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gacaaatttcttcaaccccgattgaacatgaaagttccggcatataattgaagtcaaaat 547
Query: 225 attattcttgaacattatccaacagtgccatttaatcacttgatatgcaaaattccagct 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attattcttgaacattatccaacagtgccatttaatcacttgatatgcaaaattccagct 487
Query: 285 atttagctattgatatttggataaggttccagggagagtatataattcagtggttttcat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atttagctattgatatttggataaggttccagggagagtatataattcagtggttttcat 427
Query: 345 tacgagcctacataataagtaccttcaaacaatttcatcttattccacaccgaatttttc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacgagcctacataataagtaccttcaaacaatttcatcttattccacaccgaatttttc 367
Query: 405 agtttttttttttttgttttcagagcattttataatggcgtcagttccgacagagagatg 464
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 agtttttttttttttgttttcagagcattttataatggcgtcagttcggacagagagatg 307
Query: 465 aatgtgctgaaaagaacgtcatttattcaaaagtcatgttttaagaccataagcatacgc 524
||||||||| ||||||||||||| ||||||| ||||| ||||||| ||||||||||||
Sbjct: 306 aatgtgctg-aaagaacgtcattcattcaaagtccatgtattaagacaataagcatacgc 248
Query: 525 gattacaaagcgctttt-aatgtctttttaaaaacgctgatt-tttttactttatttgc- 581
|||||| |||||||||| |||||||||||| ||||||||||| || | ||||||| |||
Sbjct: 247 gattaccaagcgcttttcaatgtctttttagaaacgctgattcttctcactttatctgca 188
Query: 582 tggcagttttgc 593
||||||||||||
Sbjct: 187 tggcagttttgc 176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,060
Number of Sequences: 1807
Number of extensions: 17060
Number of successful extensions: 316
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)