BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF09FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1011 0.0
>3x_Contig1806
Length = 53694
Score = 1011 bits (510), Expect = 0.0
Identities = 564/576 (97%), Gaps = 6/576 (1%)
Strand = Plus / Minus
Query: 87 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31544 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 31485
Query: 147 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31484 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 31425
Query: 207 aggtcgtgatgatgtatttccgatccagattaaggccattggcgatgacgataccgctgt 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31424 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 31365
Query: 267 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 31305
Query: 327 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31304 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 31245
Query: 387 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31244 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 31185
Query: 447 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31184 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 31125
Query: 507 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaa-ctttctatta 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 31124 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 31065
Query: 566 c-agaaaatacgatagagtcatcgctgaaataagtcgaatggaaaagtacatctttcctt 624
| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 31064 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 31005
Query: 625 tangttttagtcactttttcgtatttggctattttg 660
| ||||||||| |||||||| ||||||||||||
Sbjct: 31004 --aggtttagtcac-ttttcgta-ttggctattttg 30973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,941
Number of Sequences: 1807
Number of extensions: 12941
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)