BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF09RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 882 0.0
>3x_Contig1711
Length = 15491
Score = 882 bits (445), Expect = 0.0
Identities = 554/576 (96%), Gaps = 12/576 (2%)
Strand = Plus / Minus
Query: 49 taatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaagatttc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 taatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaagatttc 3714
Query: 109 tggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaattaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 tggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaattaac 3654
Query: 169 gttgtatacaccggccccaccgttttcgatttcaatttctttagccaattttcttctgtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 gttgtatacaccggccccaccgttttcgatttcaatttctttagccaattttcttctgtt 3594
Query: 229 tggatcttctggatcatatttcttcatcttatcgatggcttctggaatatatggagttct 288
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3593 tggatcttctggatcatatttcttcatcttagcgatggcttctggaatatatggagttct 3534
Query: 289 gtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgttagt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 gtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgttagt 3474
Query: 349 gattctagcttgagattttagcttgttttcaattctggaagccaacatcttttcacaagc 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3473 gattctagcttgagattttagcttgttttcaattctggaagccaacaacttttcacaagc 3414
Query: 409 cttgtttctaacagccataacgttatcttcttcatgacaagaagtggttcatgattttca 468
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 3413 cttgtttctaacagccataacgttatcttcttcatgacaagaagtgg-tcatga-tttca 3356
Query: 469 acaccttggatactt-caaaacagtatccaaaaagtttcttacgttctt-gtctaaatct 526
||||| |||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 3355 acacc-tgga-acttccaaaacagtatcc-aaaagtttcttacgttcttcgtctaaatct 3299
Query: 527 t--aagtttaaagatattcagccttgtttatgacgaccatgaccggtttattggcaaaca 584
| | |||||| |||| |||| |||||| |||||||||||||| | ||||||||||||||
Sbjct: 3298 tacaggtttaatgata-tcagtcttgttaatgacgaccatgacggatttattggcaaaca 3240
Query: 585 atggttttgatccgattggaataatttgactggagc 620
|||| |||||| ||| ||||||||||||||| ||||
Sbjct: 3239 atgg-tttgat-cgaatggaataatttgacttgagc 3206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9912
Number of Sequences: 1807
Number of extensions: 9912
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)