BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF11FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1070 0.0
>3x_Contig1720
Length = 19870
Score = 1070 bits (540), Expect = 0.0
Identities = 546/548 (99%)
Strand = Plus / Minus
Query: 86 cttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttattctc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9486 cttacatttggactctgcatatccgatattagaattcgaatacgtacacaacttattctc 9427
Query: 146 ctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctacaagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9426 ctttaaacatcggctacacggtctttcaccatcacatttggtttttgatttcctacaagc 9367
Query: 206 atcacatgcttttgatacccttctctttatggttggtaattcggcagagctgcgagaacc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9366 atcacatgcttttgatacccttctctttatggttggtaattcggcagagctgcgagaacc 9307
Query: 266 attgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaaggtga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9306 attgaccattataaagtgatgcgatgcaaatgaatatgtgttgtatacacggaaaggtga 9247
Query: 326 agaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagactgat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9246 agaaaaacaaaagctgatccagagaaaaaaaatatttaggatatgatatgaaagactgat 9187
Query: 386 gattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataacaaccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 gattccaaacaagtcctgagtatttccgcgaattagtagtttcaaaaaagataacaaccg 9127
Query: 446 cttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgctttat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 cttgaatttggttcacttttcttaatcgttgtccttcttctacttcttcctctgctttat 9067
Query: 506 ctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacagggatgtt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9066 ctgataagttcgtagggccccaatttaactccagtcttcgatgaagaagacagggatgtt 9007
Query: 566 atatttgactaaatatctcctctttatttccgagttccttaacagaaagactcaattatt 625
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9006 atatttgactaaatatctcctctttatttccgagttcctaaacagaaagactcaattata 8947
Query: 626 aacggatt 633
||||||||
Sbjct: 8946 aacggatt 8939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8896
Number of Sequences: 1807
Number of extensions: 8896
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)