BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 993 0.0
>3x_Contig1766
Length = 23951
Score = 993 bits (501), Expect = 0.0
Identities = 576/597 (96%), Gaps = 3/597 (0%)
Strand = Plus / Plus
Query: 37 agctttat-actatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaa 95
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16489 agctttatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaa 16548
Query: 96 gagaaaccgttggtggctttgatatactacacatctttttactgatctgcagcatatatg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16549 gagaaaccgttggtggctttgatatactacacatctttttactgatctgcagcatatatg 16608
Query: 156 agtgacaatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16609 agtgacaatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtc 16668
Query: 216 gatgtgctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669 gatgtgctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacg 16728
Query: 276 atagcacaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16729 atagcacaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttat 16788
Query: 336 aggaaatcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16789 aggaaatcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaa 16848
Query: 396 aaattcttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagtt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16849 aaattcttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagtt 16908
Query: 456 atatctttcttaatgggaaacatcgatgatttcattagtattgctcttgccattatcatt 515
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 16909 atatctttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcatt 16968
Query: 516 gttgttaccgtcgggtttgtacaa-aattttaattacagaaatcattttaagcctttaac 574
|||||||||||||||||||||||| ||| | | | | |||| ||||| |||| || |||
Sbjct: 16969 gttgttaccgtcgggtttgtacaagaatataagtcagagaagtcattagaagcattaaac 17028
Query: 575 -agttattcccaacggaatgtcatttgacaagatcagggcaattattccatgttctt 630
||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 17029 aagttagtcccagcggaatgtcatttgacaagatcagggcagttatcccatgttctt 17085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7816
Number of Sequences: 1807
Number of extensions: 7816
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)