BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF12FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1096 0.0
>3x_Contig1425
Length = 7919
Score = 1096 bits (553), Expect = 0.0
Identities = 585/593 (98%), Gaps = 2/593 (0%)
Strand = Plus / Plus
Query: 88 tcgatattgtggcagcccttccagtcagtgaaaaggctgttactctcgtaacgtctagct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 tcgatattgtggcagcccttccagtcagtgaaaaggctgttactctcgtaacgtctagct 4837
Query: 148 tggatgttgatgtgctatcattttactacgacaaaaggcttcctacacttttgaaacatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 tggatgttgatgtgctatcattttactacgacaaaaggcttcctacacttttgaaacatc 4897
Query: 208 acatgatggggggttgtattaagagaggagtcaaagtagaaattgtttatgctaacgctc 267
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 acatgatggggggttgcattaagagaggagtcaaagtagaaattgtttatgctaacgctc 4957
Query: 268 ttcgagatatcagaacacgtaggcagttcgtatctaacgtgaagagtgtgatcagaactt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 ttcgagatatcagaacacgtaggcagttcgtatctaacgtgaagagtgtgatcagaactt 5017
Query: 328 gcaggaacagatgaatcgtggtcagtagtggagcaaccagcccactagaatgtcgtaatg 387
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 gcaggaacagaggaatcgtggtcagtagtggagcaaccagcccactagaatgtcgtaatg 5077
Query: 388 tcattggagttacaagcattttgaactttattgggcttccgaatgacaaatctcgtaaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 tcattggagttacaagcattttgaactttattgggcttccgaatgacaaatctcgtaaat 5137
Query: 448 ccatgggcgagcttgctagtttggtacttctaaatggtagattaagaaataagagctata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 ccatgggcgagcttgctagtttggtacttctaaatggtagattaagaaataagagctata 5197
Query: 508 agcaagtcatttgtattggtaacgaagatgtagtcaatgaagattttacacagaattcat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 agcaagtcatttgtattggtaacgaagatgtagtcaatgaagattttacacagaattcat 5257
Query: 568 cgttcataatagtcaaaatgataaacccagatacactgggaagtgatgactcgaaaag-a 626
|||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||| |
Sbjct: 5258 cgttcaaaatagtcaaaaggaaaaacccagatacactggaaagtgatgactcgaaaagaa 5317
Query: 627 caaaaagctgaa-taccatgaacttaattttcatactgcacttctactgttga 678
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5318 caaaaagctgaattaccatgaacttaattttcatactgcacttctactgttga 5370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7338
Number of Sequences: 1807
Number of extensions: 7338
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)