BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZF12RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1094 0.0
>3x_Contig1791
Length = 39945
Score = 1094 bits (552), Expect = 0.0
Identities = 636/656 (96%), Gaps = 6/656 (0%)
Strand = Plus / Minus
Query: 48 tgaatgaattcaaagcaggaaaatgtaacttacttttagctactgatgtggcagccagag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6318 tgaatgaattcaaagcaggaaaatgtaacttacttttagctactgatgtggcagccagag 6259
Query: 108 gtttagacatcccaaacgtgaaaaccgttatcaatttgactttccctctaacagtagaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6258 gtttagacatcccaaacgtgaaaaccgttatcaatttgactttccctctaacagtagaag 6199
Query: 168 attacgttcacagaattggtagaaccggtcgtgctggtcaatacggtaccgcacacacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6198 attacgttcacagaattggtagaaccggtcgtgctggtcaatacggtaccgcacacacat 6139
Query: 228 tgttcactgagcaagaaaagcatcttgcaggtgcccttgttaatgtcttaaatggtgctg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6138 tgttcactgagcaagaaaagcatcttgcaggtgcccttgttaatgtcttaaatggtgctg 6079
Query: 288 gtcaacctgttcctgaggagctcaagaagttcggtactcacacaaagaagaaggaacata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6078 gtcaacctgttcctgaggagctcaagaagttcggtactcacacaaagaagaaggaacata 6019
Query: 348 gtgcgtacggtgcattcttcaaggatgtggacctatcaaagaaaccaaaaaagattacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6018 gtgcgtacggtgcattcttcaaggatgtggacctatcaaagaaaccaaaaaagattacat 5959
Query: 408 ttgattaatttaaatccgttataaagacaattcttgtattttttagcaatcacccccatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5958 ttgattaatttaaatccgttataaagacaattcttgtattttttagcaatcacccccatt 5899
Query: 468 atgtacagtagttcattcaatacagagtaaataaaagtttacaattactcttgcatcgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5898 atgtacagtagttcattcaatacagagtaaataaaagtttacaattactcttgcatcgaa 5839
Query: 528 gtttgtacattgaatgttcacgaataaaattgaaa-taaagacgta-taaatatgcgata 585
||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||||||
Sbjct: 5838 gtttgtacaatgaatgttcacgataaaaattgaaattaaagacgtattaaatatgcgata 5779
Query: 586 ttcaaacaatgactttgataggc-acgatagattgtgttgaaaaggaaagcatttaagtt 644
|||||||||||||||||| |||| |||| || ||||||||| |||||||||| ||||
Sbjct: 5778 ttcaaacaatgactttgaaaggcaacgaagaatggtgttgaaagggaaagcattaaagta 5719
Query: 645 taaaa-gggattct-tattgaagatcttcttgta-ctttgccttttattttacagt 697
||||| ||||| || ||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 5718 taaaaggggatactctatcgaagatcttcttgtaccttcgccttttattttacagt 5663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8639
Number of Sequences: 1807
Number of extensions: 8639
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)