BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1032 1419 0.0
>3x_Contig1032
Length = 3920
Score = 1419 bits (716), Expect = 0.0
Identities = 791/807 (98%), Gaps = 7/807 (0%)
Strand = Plus / Minus
Query: 90 taaattaagggtacaatgacatataccctttgaaaggctaaaatgattagtaacaagtga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 taaattaagggtacaatgacatataccctttgaaaggctaaaatgattagtaacaagtga 750
Query: 150 ttacatgaccagggaggcaaaggcatgatctctgatctgggtctaggccaagatgggggt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttacatgaccagggaggcaaaggcatgatctctgatctgggtctaggccaagatgggggt 690
Query: 210 caagactatatataagagggcagcgaagtgagaatagatgagtaagcccatggtatgtat 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caagactatatataagagggcagcgaagtgagaatagatgagtaagcccatggtatgtat 630
Query: 270 agatttgtagagctcagttatagtgcaaaccacaactaagatcatcaatacaaccaatca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agatttgtagagctcagttatagtgcaaaccacaactaagatcatcaatacaaccaatca 570
Query: 330 acatgtcacgattctttgacgcttttgaagtatacaacaagaacaaacacgcaccagctg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acatgtcacgattctttgacgcttttgaagtatacaacaagaacaaacacgcaccagctg 510
Query: 390 actttaagtcacatggtggcagcagcttgaacacgggagccacgacggcttacatgttcg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actttaagtcacatggtggcagcagcttgaacacgggagccacgacggcttacatgttcg 450
Query: 450 ctcgtgaataccggggccccagcacaggtgaaaagaaggaagcagctgcagctgcgctag 509
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 ctcgtgaataccggggccccagcacaggtgaaaagaaggaagcagctgcag-tgcgctag 391
Query: 510 cagcagacgtgaaggctggtaaagtggagttggtcaacgatccaaatactgccgattcct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cagcagacgtgaaggctggtaaagtggagttggtcaacgatccaaatactgccgattcct 331
Query: 570 ccagaaagtctagtgtcagcgaggaggccatgccccagatggtagacatatcgaagttga 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccagaaagtctagtgtcagcgaggaggccatgccccagatggtagacatatcgaagttga 271
Query: 630 ctagagaagagtttgaagctttatataacaaaatcaatcccggtatgcttcgtaaaggag 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctagagaagagtttgaagctttatataacaaaatcaatcccggtatgcttcgtaaaggag 211
Query: 690 aacctaacaacaaggtcaatttctaatcaactacacaccactattagtatatatttataa 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacctaacaacaaggtcaatttctaatcaactacacaccactattagtatatatttataa 151
Query: 750 gaatttac-acaagtaagntaaaccctgtgtgtaactaagacacagtttaacacaccagt 808
| |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 150 g-atttacaacaagtaag-taaaccctgtgtgtaactaagacacagtataacaca-cagt 94
Query: 809 -attataaagagataatagcttgagcagaataaagttcattgccgntccaaggtatttca 867
|| |||||||||||||||| |||||||| |||||| || ||||| |||| |||||||||
Sbjct: 93 aataataaagagataatagcatgagcagattaaagtacagtgccgttccagggtatttca 34
Query: 868 ccaagttttggtgatgaaaaccttctg 894
|| |||||||||||||||||| |||||
Sbjct: 33 cc-agttttggtgatgaaaacgttctg 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5456
Number of Sequences: 1807
Number of extensions: 5456
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)