BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG01RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 1300 0.0
>3x_Contig1593
Length = 10902
Score = 1300 bits (656), Expect = 0.0
Identities = 744/765 (97%), Gaps = 7/765 (0%)
Strand = Plus / Minus
Query: 45 gctttaaatcaagaaacgttattactgtctacaggtacatcgcctcagttgatgcaaact 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3676 gctttaaatcaagaaacgttattactgtctacaggtacatcgcctcagttgatgcaaact 3617
Query: 105 ggagagtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3616 ggagagtttccacttcataagacaagtactaggtcaagcgctcatacctcttcgagcagt 3557
Query: 165 ataggaacccggaataaaagtagatccaactctaatgcaatacctcagttcccaacgact 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3556 ataggaacccggaataaaagtagatccaactctaatgcaatacctcagttcccaacgact 3497
Query: 225 gacaactcggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagact 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3496 gacaactcggttggatcgaatagtggtttaaacgtcagcgtggggctatctaaaaagact 3437
Query: 285 agtaacatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3436 agtaacatgtcaaatacaaacagtgccagtatctataacaatgcgaataccacggaggta 3377
Query: 345 tcagataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggtt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3376 tcagataaacgctttttggatttgaagaagttgattgtggggcaaaatggaaacgaggtt 3317
Query: 405 gggtccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 gggtccaactcatcagatatatcaaccccatctttaagttctcctttggaattgactaat 3257
Query: 465 agtccccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 agtccccagtatgaagagatcttgtataacgctccaatggcatcagggtcatcgaatttg 3197
Query: 525 gctatcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttttc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3196 gctatcacaggaagcagaagcaggtctaactccaacattaataccatccaaaactttttc 3137
Query: 585 taagggaatagcanagctcctcgaagttcatttgacgaatcttcagataatcgatccttc 644
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3136 tcagggaatagcaaagctcctcgaagttcatttgacgaatcttcagataatcgatccttc 3077
Query: 645 acgtcttctgagatt-atgtatcttagagggntcctctacttaggagaagctcaagtgct 703
||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||
Sbjct: 3076 acgtcttctgagattaatgtatctaagagggttcctctacttaggagagcttcaagtgct 3017
Query: 704 ttgctgaggaaacgct-ccntcgacaaaagtgccgaaatttaccctgatgtaaataccgg 762
|||||||||||||||| || ||||| |||||||||| | || ||||||||||||| |||
Sbjct: 3016 ttgctgaggaaacgctcccttcgac-aaagtgccgagaattcacctgatgtaaata-cgg 2959
Query: 763 gactttggcattgtttcacccaattaaggattttcaggatggctt 807
||| |||||||||| ||| |||||||| || ||||||||||||||
Sbjct: 2958 gac-ttggcattgtatca-ccaattaatga-tttcaggatggctt 2917
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6172
Number of Sequences: 1807
Number of extensions: 6172
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)