BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1752 1344 0.0
>3x_Contig1752
Length = 22471
Score = 1344 bits (678), Expect = 0.0
Identities = 791/817 (96%), Gaps = 9/817 (1%)
Strand = Plus / Plus
Query: 44 gcttcatgaatctggcggtcccatatttcaaacatgcatttaagcccataattcttgttt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 gcttcatgaatctggcggtcccatatttcaaacatgcatttaagcccataattcttgttt 4823
Query: 104 ccatgaccacccttcaaattgttaattttccaaattatcgaacccgctgttatgtcgaac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 ccatgaccacccttcaaattgttaattttccaaattatcgaacccgctgttatgtcgaac 4883
Query: 164 acaacatctcctatatcgcttttaaacaggggcggcttttcgaggtcaatattccacttt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 acaacatctcctatatcgcttttaaacaggggcggcttttcgaggtcaatattccacttt 4943
Query: 224 cgaataactgactttatcggaattttaattaaaagctcctttgcactatcctgagctttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 cgaataactgactttatcggaattttaattaaaagctcctttgcactatcctgagctttg 5003
Query: 284 aaatgcgtagttatggcagctttcaacaatagcttatcctgggtttcttggttctttcta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 aaatgcgtagttatggcagctttcaacaatagcttatcctgggtttcttggttctttcta 5063
Query: 344 ggtttttgggatagcccgaatgactgtagttttataactggttcatcaagtagcggtcta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 ggtttttgggatagcccgaatgactgtagttttataactggttcatcaagtagcggtcta 5123
Query: 404 ttcaatttataattacaaagctcaaattctccatccggtggaataaacttaataactgga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ttcaatttataattacaaagctcaaattctccatccggtggaataaacttaataactgga 5183
Query: 464 gattcttccttgattaaggtatgcaggtctacgcattcatggaattttaaacgtttcatg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 gattcttccttgattaaggtatgcaggtctacgcattcatggaattttaaacgtttcatg 5243
Query: 524 aagtgtacattcttctgcatcaacttattcaatcctatactcaattgaggcataccagac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 aagtgtacattcttctgcatcaacttattcaatcctatactcaattgaggcataccagac 5303
Query: 584 aaataactccggcatattattgttccgttgattacattatttctg-ccacaccttcctcg 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5304 aaataactccggcatattattgttccgttgattacattatttctgaccacaccttcctcg 5363
Query: 643 aaat-cataatgaattct-atttctc-attacatcaagaaagaattcgtttctta-cgtt 698
|||| ||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||
Sbjct: 5364 aaatccataatgaattctaatttctcaattacatcaagaaagaattcg-ttcttaccgta 5422
Query: 699 atggataccctttagacgccatgagacagcagatgtcatcgtttcgagaatataactgtt 758
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5423 atggatacccttaggacgccatgagacagcagatgtcatcgttcgaagaatataactgtt 5482
Query: 759 tatgattgtttcatcctgtncacctgttggcagcttatggtttttcaaaagctggattct 818
||||| |||||||||||| |||||| |||||||| || |||||||| | |||| |||||
Sbjct: 5483 tatgaatgtttcatcctggtcacctggtggcagctcat-gtttttcagaggctgtattct 5541
Query: 819 tggaaatcatcgccgggtttgaaaaccttctaccttt 855
|| |||||||| ||||||||| || |||||||||||
Sbjct: 5542 cgg-aatcatcgtcgggtttgataa-cttctaccttt 5576
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6695
Number of Sequences: 1807
Number of extensions: 6695
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)