BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG03RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1017 0.0
3x_Contig1381 105 2e-22
>3x_Contig1319
Length = 7600
Score = 1017 bits (513), Expect = 0.0
Identities = 610/639 (95%), Gaps = 3/639 (0%)
Strand = Plus / Minus
Query: 191 caaaatccacgtcatcgtctgaactagtactcgaactgtcgctatcatcatcgtcatcat 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 caaaatccacgtcatcgtctgaactagtactcgaactgtcgctatcatcatcgtcatcat 7541
Query: 251 cgtcatcgtcatcatcatcatcatcatcatcatcatcatcatcgtcatcatctactgcca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7540 cgtcatcgtcatcatcatcatcatcatcatcatcatcatcatcgtcatcatctactgcca 7481
Query: 311 ttgtacctccttcatcctccgagagagactggtagtctgaagacgctgtagcactgtccg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480 ttgtacctccttcatcctccgagagagactggtagtctgaagacgctgtagcactgtccg 7421
Query: 371 aacctgatgtgatggctgagtcctgattcgttgatatcagctttccgttcttacccatcg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7420 aacctgatgtgatggctgagtcctgattcgttgatatcagctttccgttcttacccatcg 7361
Query: 431 cattcgaagatcgaccttttagcttagttccggctttgggattcttatataacggtaact 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7360 cattcgaagatcgaccttttagcttagttccggctttgggattcttatataacggtaact 7301
Query: 491 tggacaaattcgagcccctgctgttcgaatcctgtggtatatcactcagcgacgaatcac 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300 tggacaaattcgagcccctgctgttcgaatcctgtggtatatcactcagcgacgaatcac 7241
Query: 551 tagaatatattagactgaaacgtctcggtctagatctt-aatgcggaagcttatncttct 609
|||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |||||
Sbjct: 7240 tagaatatattagactgaaacgtctcggtctagaacttaaatgcggaggcttatccttct 7181
Query: 610 tatttcccattttatcctgntacgctttcagagtcgtaggcttctttccactagttaact 669
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 7180 tatttcccattttatcctgtaacgctttcagagtcgtaggcttcttcccactagttaact 7121
Query: 670 ttctcgggcttttacctgacattatatttttgtgtttatagttgcaattagcagctgcaa 729
| |||||||||||||||||||| |||| | |||||| |||||||||||||||||||||
Sbjct: 7120 tcctcgggcttttacctgacataatatatatgtgttatcagttgcaattagcagctgcaa 7061
Query: 730 taagggtattctactttttaatgaacttttctatttgccaccgggatcaaat-aattggc 788
||| ||||||||||| |||| || |||||||||| || |||| ||||||||| ||| |||
Sbjct: 7060 taatggtattctactctttagtggacttttctatatg-cacctggatcaaatcaataggc 7002
Query: 789 tcaacaatttttttaaaaggaaaccccaagaaaaaaaaa 827
|||||||||| | ||||| ||||| ||||||||||||
Sbjct: 7001 tcaacaatttaataaaaagaaaaccaaaagaaaaaaaaa 6963
>3x_Contig1381
Length = 7318
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 234 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 293
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5299 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5240
Query: 294 gtcatcatc 302
||||||||
Sbjct: 5239 atcatcatc 5231
Score = 105 bits (53), Expect = 2e-22
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 234 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 293
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5302 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5243
Query: 294 gtcatcatc 302
||||||||
Sbjct: 5242 atcatcatc 5234
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 235 tcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatcg 294
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5304 tcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatca 5245
Query: 295 tcatcatc 302
||||||||
Sbjct: 5244 tcatcatc 5237
Score = 103 bits (52), Expect = 6e-22
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 234 atcatcatcgtcatcatcgtcatcgtcatcatcatcatcatcatcatcatcatcatcatc 293
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5296 atcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatc 5237
Query: 294 gtcatcat 301
|||||||
Sbjct: 5236 atcatcat 5229
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,906
Number of Sequences: 1807
Number of extensions: 12906
Number of successful extensions: 1098
Number of sequences better than 1.0e-20: 2
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)