BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZG04FM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1239                                                        1465   0.0  

>3x_Contig1239 
          Length = 4094

 Score = 1465 bits (739), Expect = 0.0
 Identities = 816/837 (97%), Gaps = 4/837 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   ttgttaagaaactccctccgacgaatgatgaagagtcgcttccaatgaatatagactcat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ttgttaagaaactccctccgacgaatgatgaagagtcgcttccaatgaatatagactcat 1952

                                                                        
Query: 147  tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 tcaggatttatttagaatccttaggggacgcggatcgtattgtggatttggaatcagcag 1892

                                                                        
Query: 207  attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 attccaatacagatggaaagataattgatttgaaaaacggtgataggtttgggttagtta 1832

                                                                        
Query: 267  gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 gattagatgagccggtctcagtgaatcaacaacggggagccaaactcaaattcaacttaa 1772

                                                                        
Query: 327  atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 atataagaccaggagcttggcctttcaactacagaattgtgcttactgatgtgacagatc 1712

                                                                        
Query: 387  aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 aaaaatcgccatgtacatcaaggtcaagtgactttctggactccatcatgcagcatgttt 1652

                                                                        
Query: 447  cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 cagacgaatctgattctgagaacgcatggtccaaggcaaccgattggaacgaggaaatta 1592

                                                                        
Query: 507  aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 aagttgaaattggcaaggaggatgaagttgttgctgtggtagatgatactgcgccaacgg 1532

                                                                        
Query: 567  tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 tagcactcaagccaacctctgaccccagtacactgagctcgtccaaggagtcgtctgttt 1472

                                                                        
Query: 627  ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ctggtaactctcactctcgtgcatgcatttacatcaacagtgacagcgacagcgacagtg 1412

                                                                        
Query: 687  gctatgatgaccatacttttatggatccagagaaagagcaccatcacttcaaatgccgct 746
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 1411 gctatgatgaccatacttttatggatccagagaagaagcaccatcacttcaaatgccgct 1352

                                                                        
Query: 747  ttaagagaggaagaggggacagatcaaggtggtcgacgtttagggtgaataaagctaagg 806
             |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1351 ataagagaggaagagggaacagatcaaggtggtcgacgtttagggtgaataaggctaagg 1292

                                                                        
Query: 807  gggaagaatttggtagatagagaagatttgacttatatagtggtttcatagggattaatg 866
            || |  ||||||||||| ||||||||||||||||||||||||| |||||  ||||| |||
Sbjct: 1291 ggaagaaatttggtagaaagagaagatttgacttatatagtgg-ttcattaggatttatg 1233

                                                                     
Query: 867  ntggggttccattggtactttggnaagttttacctaccggtgccaaattttgtcgaa 923
             | ||||||||||||||||||||  ||||||| |||| | || ||||||||||||||
Sbjct: 1232 tt-gggttccattggtactttggg-agttttagctactgttg-caaattttgtcgaa 1179


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5400
Number of Sequences: 1807
Number of extensions: 5400
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)