BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1233 0.0
>3x_Contig1641
Length = 13261
Score = 1233 bits (622), Expect = 0.0
Identities = 698/717 (97%), Gaps = 6/717 (0%)
Strand = Plus / Plus
Query: 44 aagcttaatggaatgtctcgattcttcc-gtgaagatccggtaatcagcagcttatccac 102
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10157 aagcttaatggaatgtctcgattcttccagtgaagatccggtaatcagcagcttatccac 10216
Query: 103 attagtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10217 attagtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgcc 10276
Query: 163 atggtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtaccttat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10277 atggtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtaccttat 10336
Query: 223 ctgtttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10337 ctgtttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttc 10396
Query: 283 acagtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtccttt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10397 acagtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtccttt 10456
Query: 343 tatcgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtaca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10457 tatcgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtaca 10516
Query: 403 gaattttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10517 gaattttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcat 10576
Query: 463 ggaaacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10577 ggaaacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatc 10636
Query: 523 ttccgaagcctatccaatggcctaccaacgcacttatcacctcccggagtgcatccccct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10637 ttccgaagcctatccaatggcctaccaacgcacttatcacctcccggagtgcatccccct 10696
Query: 583 acctcccataagcttattttgacacattctacacactactgcaatagctttccgaaagcg 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10697 acctcccataagcttattttgacacattctacacactactgcaatagctttccgaaggcg 10756
Query: 643 tagactaacgcaccaatcccaaacc-accggggaacccattttgcaggatgt-ccccgac 700
||||||||||||||| ||||||||| |||||||||||| |||||| || || | | |||
Sbjct: 10757 tagactaacgcaccagtcccaaaccaaccggggaaccccatttgcaagaagtacacagac 10816
Query: 701 caaaaaa--caaaaaagaaccgtgaacggtaagat-caggaccctcacttagtatac 754
|||||| |||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct: 10817 gaaaaaaacaaaaaaagacacgtgaacggtaagatacaggaccctcactcagtatac 10873
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,664
Number of Sequences: 1807
Number of extensions: 16664
Number of successful extensions: 463
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)