BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG05RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1384 0.0
>3x_Contig1666
Length = 16162
Score = 1384 bits (698), Expect = 0.0
Identities = 770/786 (97%), Gaps = 6/786 (0%)
Strand = Plus / Plus
Query: 43 gcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctttt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12643 gcttgatatatgtactgaagtcatcaatcatttggtcaatcatcatcatggtaggctttt 12702
Query: 103 tgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtggaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12703 tgagttttctagcgtattctaatctgattgatattatttcttggatcaaacgaagtggaa 12762
Query: 163 acgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaatagaat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12763 acgttaaaagagaatgcaatttgtccaccggtaaaggtaagcgcatttcgtgaatagaat 12822
Query: 223 tttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823 tttgttgcttcaaaaacaccaatttgctcttgaacatccaaggggcatgcttgaaaaaga 12882
Query: 283 tctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaagatc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12883 tctttttctgaaagataccttcgatgtccttctctttcataatttgttctgcgaaagatc 12942
Query: 343 tgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaaat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12943 tgtcatttttgaagataccttcagtgtctaacgaatctttcgtaaaagttacatccaaat 13002
Query: 403 catcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacgagt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13003 catcattttgagtccattgtttcaatgcctctatctcatattgtaatccttcgtacgagt 13062
Query: 463 ttatcaacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacaggtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13063 ttatcaacgaattgagtgcttcaattctgcttacaaaattagaggttttggttacaggtt 13122
Query: 523 tctcgagattcatattggggagatttttccaatatccaaccactttgtaatatttattca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13123 tctcgagattcatattggggagatttttccaatatccaaccactttgtaatatttattca 13182
Query: 583 atagtattttggcttcttctatgacaacttcagggttttcttctttttca-ttttatagt 641
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13183 atagtattttggcttcttctatgacaacttcagggttttcttctttttcatttttatagt 13242
Query: 642 tcaagatttcttcggatacctcatcagcagtagtttttagaatatttcaatgatttacgt 701
|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 13243 tcaagatttcttcgaatacctcatcagcagtag-ttttagaatattccaatgatttacg- 13300
Query: 702 ttgatctttgaccgttctaccatttaaccaagcctttagttcttaccatattagatcatt 761
|||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 13301 ttgatcttcgacggttctaccatttaaccaagccttaagttctaaccatattagatcatt 13360
Query: 762 atgattcagtaaaaatttcatcaagccttgcgtttcgcaaagttttgccttttcactcct 821
|||||||||| ||||||||||| || |||||||||||| |||||||| ||| |||||| |
Sbjct: 13361 atgattcagt-aaaatttcatc-aggcttgcgtttcgc-aagttttgtcttctcactctt 13417
Query: 822 aacaat 827
||||||
Sbjct: 13418 aacaat 13423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9928
Number of Sequences: 1807
Number of extensions: 9928
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)