BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG06RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1281 0.0
>3x_Contig1720
Length = 19870
Score = 1281 bits (646), Expect = 0.0
Identities = 737/760 (96%), Gaps = 6/760 (0%)
Strand = Plus / Minus
Query: 44 cttggatcttagccttgattaattcgaacagtgtgacgatatcagcagagaactttctga 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5856 cttggatcttagccttgattaagtcgaacagtgtgacgatatcagcagagaactttctga 5797
Query: 104 taccttcagacaacttttcagtggccatagcatcttcgttcaactcgaatctgaatttag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5796 taccttcagacaacttttcagtggccatagcatcttcgttcaactcgaatctgaatttag 5737
Query: 164 gctcgtcgttgatgaaagaaactctttcagaaccttcagcctttgcggattcagggtcca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5736 gctcgtcgttgatgaaagaaactctttcagaaccttcagcctttgcggattcagggtcca 5677
Query: 224 agatcttagcaactggttcatcagaggacaacaattcgtccaacaactttggagaaatgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5676 agatcttagcaactggttcatcagaggacaacaattcgtccaacaactttggagaaatgg 5617
Query: 284 tcaagaaatcgacaccggcaagagccttaatttcacccacgtttctgaaggaagcaccca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5616 tcaagaaatcgacaccggcaagagccttaatttcacccacgtttctgaaggaagcaccca 5557
Query: 344 taacaatggtgttgtaaccatgcttcttgtagtaattgtagatactcttgacagaaatca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5556 taacaatggtgttgtaaccatgcttcttgtagtaattgtagatactcttgacagaaatca 5497
Query: 404 cacctggatcagtttcagcagtgtaagtttcaccagtgctggccttgtaccaatccaaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5496 cacctggatcagtttcagcagtgtaagtttcaccagtgctggccttgtaccaatccaaga 5437
Query: 464 ttctaccaacgaatggagaaatcaaggtaacgttagcttcagcagcagcaacggcttgag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5436 ttctaccaacgaatggagaaatcaaggtaacgttagcttcagcagcagcaacggcttgag 5377
Query: 524 cgaaagagaacaacaaagtcaagttgacgtggatatcgtgttccttttctagttcttgag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5376 cgaaagagaacaacaaagtcaagttgacgtggatatcgtgttccttttctagttcttgag 5317
Query: 584 cagcttggataccttcccaagtggaagcaatcttgatcaagactctgtccttgggaatta 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5316 cagcttggataccttcccaagtggaagcaatcttgatcaagactctgtccttggaaatac 5257
Query: 644 cctctgcttcatacaacnntgatgattncaaagcccttctt-acggtagcattcttgttc 702
| ||||||||||||||| |||||||| | || ||||||| |||||||||| |||| ||
Sbjct: 5256 cttctgcttcatacaac-ttgatgatttccaaagccttcttaacggtagcatccttg-tc 5199
Query: 703 gagggac-atctagcatcgacttcagtagaaactctacctgggacgacctttcagattgc 761
|| |||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct: 5198 gaaggacaatctagcatcgacttcagtagaaactctacctggaacgaccttcaagatagc 5139
Query: 762 agttaccgaattcgaccattaggcttgtcaacagcaattt 801
|| ||||||||||||||| || ||||||||||||||||||
Sbjct: 5138 ag-taccgaattcgaccaata-gcttgtcaacagcaattt 5101
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6858
Number of Sequences: 1807
Number of extensions: 6858
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)