BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG07RM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 1059 0.0
>3x_Contig1715
Length = 16241
Score = 1059 bits (534), Expect = 0.0
Identities = 605/622 (97%), Gaps = 7/622 (1%)
Strand = Plus / Plus
Query: 46 tagcaactccaccatactcttgggaaggtctgcgcgacgaaagtgaagtttgaggatcgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4344 tagcaactccaccatactcttgggaaggtctgcgcgacgaaagtgaagtttgaggatcgt 4403
Query: 106 tagctggcgaagttaccattgatctcggtggtttggggggaggagcgaaaccaacgtcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4404 tagctggcgaagttaccattgatctcggtggtttggggggaggagcgaaaccaacgtcaa 4463
Query: 166 cattatagttataagcacctaacaccgcagcttgatgtacttcctctttgggtctaccta 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4464 cattatagttataagcacctaacaccgcagcttgatgtacttcctctttgggtctaccta 4523
Query: 226 tgggagcacgttctgtggaggtaatgcgctggtgagtttgaatcggaggtaatgtcggtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4524 tgggagcacgttctgtggaggtaatgcgctggtgagtttgaatcggaggtaatgtcggtt 4583
Query: 286 tcgaagacacaggaggacgtggaggatttggtggcttatgtgatactgtaggacgagcat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4584 tcgaagacacaggaggacgtggaggatttggtggcttatgtgatactgtaggacgagcat 4643
Query: 346 gcgatacaggtggtgacattggcaatccgttatgcgttggctttggcggaggtgggaaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4644 gcgatacaggtggtgacattggcaatccgttatgcgttggctttggcggaggtgggaaag 4703
Query: 406 atacagtagattcatgataaactcccgtgatactttcattgggtctaacttggtcatcac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4704 atacagtagattcatgataaactcccgtgatactttcattgggtctaacttggtcatcac 4763
Query: 466 caacttcagctgatgttccagttgctgcagctggggtcacagtgtttggtttggtatgat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4764 caacttcagctgatgttccagttgctgcagctggggtcacagtgtttggtttggtatgat 4823
Query: 526 caacagatgtaggtggtctgacatttcttgaaggcaa--gtgcangaccctgtgaaagtg 583
||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 4824 caacagatgtaggtggtctgacattccttgaaggcaaaggtgcaggacctggtgaaagtg 4883
Query: 584 atttccccttttnc-atacngatgcgtccc-tgatgacttcttc-aacttgaag-agatg 639
|||||||||| | | |||| |||||||||| |||||| ||||| ||||||||| |||||
Sbjct: 4884 atttccccttctccaatacggatgcgtcccttgatgaactcttcaaacttgaagaagatg 4943
Query: 640 acctattcttgt-gagaggagg 660
|||||| ||||| |||||||||
Sbjct: 4944 acctatccttgtggagaggagg 4965
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,440
Number of Sequences: 1807
Number of extensions: 11440
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)