BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1255 0.0
>3x_Contig1474
Length = 10584
Score = 1255 bits (633), Expect = 0.0
Identities = 704/725 (97%), Gaps = 2/725 (0%)
Strand = Plus / Minus
Query: 48 atttgatttcttttccaatcgagaagtacaatttttcaaaagctcatcgcatcaaaagtg 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6095 atttgatttcttttccaagcgagaagtacaatttttcaaaagctcatcgcatcaaaagtg 6036
Query: 108 gtctttaggaacttgcattaaggactgtagtcattgaaacgaagtaaacgtctgtcaagg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6035 gtctttaggaacttgcattaaggactgtagtcattgaaacgaagtaaacgtctgtcaagg 5976
Query: 168 tgcaaatattctgaaactgcactcattgagtagttggtggagtttctatccttacaaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5975 tgcaaatattctgaaactgcactcattgagtagttggtggagtttctatccttacaaata 5916
Query: 228 gccgagaagtaaaatgggtaaatcaaaaagaagatctagagcttctaatgctcgtgccaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5915 gccgagaagtaaaatgggtaaatcaaaaagaagatctagagcttctaatgctcgtgccaa 5856
Query: 288 tccattgttgagaaatgctgctaaagatgatcaaattagaactaagagaattcaaccatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5855 tccattgttgagaaatgctgctaaagatgatcaaattagaactaagagaattcaaccatt 5796
Query: 348 gatagaacagttatccagcgtgattccaaacgatagatctatagctttaggcacgattat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5795 gatagaacagttatccagcgtgattccaaacgatagatctatagctttaggcacgattat 5736
Query: 408 ggtcttatgtgaagatcctcatatgagatctcttttcctaaaggaaaaattggttaatgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5735 ggtcttatgtgaagatcctcatatgagatctcttttcctaaaggaaaaattggttaatgt 5676
Query: 468 tgttacatccaaactattgacggattccaatactgatatcgtggtagaatcttacggtgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5675 tgttacatccaaactattgacggattccaatactgatatcgtggtagaatcttacggtgt 5616
Query: 528 tttaagatatctagcactagatgagggctatgatttagcaacgcatatttggagattgaa 587
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5615 tttaagaaatctagcactagaagagggctatgatttagcaacgcatatttggagattgaa 5556
Query: 588 tatttgggtgaatattgagttcggtttgtcgcaagttcaacagtcactacaatcaa-gaa 646
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 5555 tatttgggtgaatattgagtccggtttgtcgcaagttcaacagtcactacaatcaatgaa 5496
Query: 647 atctgatgaatcttaagctaaaaagaattctaaaa-gctgttatacgattttgctgaaaa 705
||||||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 5495 atctgatgagtctaaagctaaaaaggaatctaaaaggctgttatacgattttgctgaaaa 5436
Query: 706 tattctatcattattaggggccttttttaacggttcggatgctttacttgatgacctcgg 765
||| |||||||||||| ||| || | ||||| ||||||||| ||||||||||| |||
Sbjct: 5435 tatcttatcattattagtggcattagtaaacggatcggatgctatacttgatgacgtcgt 5376
Query: 766 caaga 770
|||||
Sbjct: 5375 caaga 5371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8243
Number of Sequences: 1807
Number of extensions: 8243
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)