BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG09FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1611 1507 0.0
>3x_Contig1611
Length = 15286
Score = 1507 bits (760), Expect = 0.0
Identities = 831/852 (97%), Gaps = 3/852 (0%)
Strand = Plus / Minus
Query: 95 tgcaatttaaattaatctcaaaaagacaaagaaagtactgacatctcgtcctagaagttc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14158 tgcaatttaaattaatctcaaaaagacaaagaaagtactgacatctcgtcctagaagttc 14099
Query: 155 agtaccagagactgagcaacactaaacgaaactacaaacgaaactacaccgcattctgca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14098 agtaccagagactgagcaacactaaacgaaactacaaacgaaactacaccgcattctgca 14039
Query: 215 ccagatacagataacactgatttacctttcctggtttcaccgatagtcattgttttcatt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14038 ccagatacagataacactgatttacctttcctggtttcaccgatagtcattgttttcatt 13979
Query: 275 ttacctgcgtttcgccgacttacttgttaccgcaatatctgactgcatttttcgctcgat 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13978 ttacctgcgtttcgccgacttacttgttaccgcaatatctgactgcatttttcgctcgat 13919
Query: 335 aatcttttttttcatctatttcttgaactaggcgatttttcgtatttttctgtcaaaaaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13918 aatcttttttttcatctatttcttgaactaggcgatttttcgtatttttctgtcaaaaaa 13859
Query: 395 aaatcgaaaagaaaagtttatttctttttgcctgtaactgctttcaccgtttaaaccaat 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13858 aaatcgaaaagaaaagtttatttctttttgcctgtaactgctttcaccgtttaaaccaat 13799
Query: 455 tattgcatatacaccgattaaggaaccttaaggtacggcatatacataaaccagatactc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13798 tattgcatatacaccgattaaggaaccttaaggtacggcatatacataaaccagatactc 13739
Query: 515 gacaccgagttagatttattgaaagacaaagataaatcgtattaaattgaagtaaattta 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13738 gacaccgagttagatttattgaaagacaaagataaatcgtattaaattgaagtaaattta 13679
Query: 575 ttctggtaaacgtagatctttccttgagttacgagacaacacaagacagacatccatcca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13678 ttctggtaaacgtagatctttccttgagttacgagacaacacaagacagacatccatcca 13619
Query: 635 acatgcatagtaagacattcattcatcaattgcatcatatcttgatgcaggatgaattga 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13618 acatgcatagtaagacattcattcatcaattgcatcatatcttgatgcaggatgaattga 13559
Query: 695 tagaatggattanatggtctgaggatgatgagtccatgtttattatcataccgaacgctn 754
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13558 tagaatggattagatggtctgaggatgatgagtccatgtttattatcaaaccgaacgctc 13499
Query: 755 caatattttctagcaaagtgttggaacgttttttcaagcacgggtatgttttcagttttc 814
||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||
Sbjct: 13498 caaatttttctagcaaagtgttgaaacgttttttcaagcacggtaatgtttccag-tttc 13440
Query: 815 gtgaggcagttgcacatgtatggtttccataagctaccgcacagtgcgttctncactttg 874
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 13439 gtgaggcagttgcacatgtatggtttccataagctaccgcacagtgcgtcctccactttg 13380
Query: 875 gcagcttctggcgctggtaacaatggtgcaanncgcct-tacggacaacgctaccttcaa 933
|||||||||||||||| |||||||||||||| ||||| |||| |||||||||| | |||
Sbjct: 13379 gcagcttctggcgctgataacaatggtgcaa-ccgcctctacgaacaacgctacttccaa 13321
Query: 934 aggcgaattcga 945
| ||||| ||||
Sbjct: 13320 aagcgaaatcga 13309
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7487
Number of Sequences: 1807
Number of extensions: 7487
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)