BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 1302 0.0
3x_Contig1051 147 5e-35
3x_Contig1718 145 2e-34
3x_Contig844 145 2e-34
3x_Contig1747 143 7e-34
3x_Contig1468 143 7e-34
3x_Contig939 135 2e-31
>3x_Contig1184
Length = 5183
Score = 1302 bits (657), Expect = 0.0
Identities = 820/859 (95%), Gaps = 12/859 (1%)
Strand = Plus / Minus
Query: 37 cttgcatacttac-atgttgggtcctactggacactgtagttagatggcagaagattaga 95
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 cttgcatacttaccatgttgggtcctactggacactgtagttagatggcagaagattaga 2254
Query: 96 ttgtaataagaaaatcacgtttgattatgaatgcacgtga-caaaagaactaaacatagt 154
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2253 ttgtaataagaaaatcacgtttgattatgaatgcacgtgatcaaaagaactaaacatagt 2194
Query: 155 gctcgagagtttagtactttcaaaaaaaaagctcccgtggcgtaatggcaacgcgtctga 214
|||||||||||||||||||| ||||||||||||||||||||||||||| || | || |||
Sbjct: 2193 gctcgagagtttagtactttgaaaaaaaaagctcccgtggcgtaatgggaaggggtgtga 2134
Query: 215 cttctaatcagaagattgtgggttcgacccccaccgtgagtgcttttatttttttaattt 274
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 2133 cttctaatcagaagattgtgttttt-acccccaccgtgagtgcttttatttttttaattt 2075
Query: 275 ttttttacatctctggtcttctttttctaaggaatgagagcattaggaaggaaggcattg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 ttttttacatctctggtcttctttttctaaggaatgagagcattaggaaggaaggcattg 2015
Query: 335 ctgcagcaatgttcataatatcaacagatactacccaccattttgtgttattcttttatt 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 ctgcagcaatgttcataatatcaacagatactacccaccattttgtgttattcttttatt 1955
Query: 395 caacgtacctatattatgtattatacagctctaatctttaagaacgtatgataataatct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 caacgtacctatattatgtattatacagctctaatctttaagaacgtatgataataatct 1895
Query: 455 atagttaatgaaacattaaatactaatacgtcgcagacgcattaccgtttgtcatcggtg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 atagttaatgaaacattaaatactaatacgtcgcagacgcattaccgtttgtcatcggtg 1835
Query: 515 caacatgctcacaattgtctttgttatcgtcattgtcctgagatttggagatgagctttg 574
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1834 caacatgctcacaattgtctttgttatcgtcattgtcctgagaattggagatgagctttg 1775
Query: 575 atttttcccatattntttcaagacccctcttg-aaatatctacattgt-atccatgactg 632
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1774 atttttcccatattttttcaagacccctcttgaaaatatctacattgtaatccatgactg 1715
Query: 633 ntagtcttgcttctatatcagtatcatcaagtctcattaaacgtactaatgctaaacctc 692
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1714 ttagtcttgcttctatatcagtatcatcaggtctcattaacgttactaatgctaaacctc 1655
Query: 693 tgatcatctgctt-aaatatatgacaacgccattattgagtaccgatacacttttcatgt 751
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 tgatcatctgcttcaaatatatgacaacgccattattgagtaccgatacacttttcatgt 1595
Query: 752 ctgtgccatccttattataggaattttgcagcttacctttggattaagtc-tggaaatcg 810
|||||||||| ||||||| |||||| ||||||||||||||| | |||||| || ||||||
Sbjct: 1594 ctgtgccatctttattattggaattctgcagcttacctttgta-taagtcttgtaaatcg 1536
Query: 811 atgggtaccatcaacgatttctgcacattacttcattagtctgggattccaaccggcgaa 870
|| |||| ||||||||| ||||||||| |||||||| ||||| |||| | |||||||||
Sbjct: 1535 at-ggtaacatcaacgaattctgcaca-tacttcataagtct-ggatatccaccggcgaa 1479
Query: 871 gaatttgtccgatacatat 889
|||| ||| ||||||||||
Sbjct: 1478 gaatctgt-cgatacatat 1461
>3x_Contig1051
Length = 4315
Score = 147 bits (74), Expect = 5e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 183 aagctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 aagctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgac 3960
Query: 243 ccccaccgtgagtgcttt 260
||||||||||||||||||
Sbjct: 3961 ccccaccgtgagtgcttt 3978
>3x_Contig1718
Length = 19496
Score = 145 bits (73), Expect = 2e-34
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 184 agctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 agctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgacc 4359
Query: 244 cccaccgtgagtgcttt 260
|||||||||||||||||
Sbjct: 4358 cccaccgtgagtgcttt 4342
>3x_Contig844
Length = 2953
Score = 145 bits (73), Expect = 2e-34
Identities = 83/85 (97%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 185 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 1638
Query: 245 ccaccgtgagtgcttttattttttt 269
||||||||||||| |||||||||||
Sbjct: 1639 ccaccgtgagtgc-tttattttttt 1662
>3x_Contig1747
Length = 15671
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 185 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2496
Query: 245 ccaccgtgagtgcttt 260
||||||||||||||||
Sbjct: 2495 ccaccgtgagtgcttt 2480
>3x_Contig1468
Length = 9852
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 185 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8709 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 8650
Query: 245 ccaccgtgagtgcttt 260
||||||||||||||||
Sbjct: 8649 ccaccgtgagtgcttt 8634
>3x_Contig939
Length = 3877
Score = 135 bits (68), Expect = 2e-31
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 185 gctcccgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 gctcgcgtggcgtaatggcaacgcgtctgacttctaatcagaagattgtgggttcgaccc 2150
Query: 245 ccaccgtgagtg 256
||||||||||||
Sbjct: 2149 ccaccgtgagtg 2138
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8280
Number of Sequences: 1807
Number of extensions: 8280
Number of successful extensions: 143
Number of sequences better than 1.0e-20: 7
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)