BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG10FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1023 0.0
>3x_Contig1337
Length = 7771
Score = 1023 bits (516), Expect = 0.0
Identities = 547/556 (98%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 87 aaacggtaggcgagttgtcattatcattatcatcatcatcatcctgcaaaggatccatat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 aaacggtaggcgagttgtcattatcattatcatcatcatcatcctgcaaaggatccatat 2773
Query: 147 gtaaattaaaatcttatctgggtataacgtgtgtaatataattttttttcttcacaaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2774 gtaaattaaaatcttatctgggtataacgtgtgtaatataattttttttcttcacaaata 2833
Query: 207 ggccattcgggcatctgttgatcaatgtattagagcaataccaagatgtcgaagacatct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 ggccattcgggcatctgttgatcaatgtattagagcaataccaagatgtcgaagacatct 2893
Query: 267 tggtattgttgttacatatatgacaaaccacgtgactttctgtcacgtgcttcccatccc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 tggtattgttgttacatatatgacaaaccacgtgactttctgtcacgtgcttcccatccc 2953
Query: 327 cacgtgacactaaattttcttctttttttcctctgccgtccaatgaaatcgccgtgcgta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 cacgtgacactaaattttcttctttttttcctctgccgtccaatgaaatcgccgtgcgta 3013
Query: 387 atgctgacgttaccagccacacagaaacacaggttttcaaaggcacgggaaaccgtggga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 atgctgacgttaccagccacacagaaacacaggttttcaaaggcacgggaaaccgtggga 3073
Query: 447 ctactcaccgttatataacggatttcaaattgatttggaatttaaacttttactactatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 ctactcaccgttatataacggatttcaaattgatttggaatttaaacttttactactatg 3133
Query: 507 ccccagcggcgctatttgccaagccgtaatctttttcatttttttcccaattcattgtaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ccccagcggcgctatttgccaagccgtaatctttttcatttttttcccaattcattgtaa 3193
Query: 567 atatttttatattactattccaagtttattttaagcttgtacg-tttatttactttttta 625
|||| | ||||||||||| | |||||||| | ||||||||||| |||||| |||||||||
Sbjct: 3194 atatatatatattactatacaaagtttatataaagcttgtacgttttattcactttttta 3253
Query: 626 taagcactttttcgca 641
||||||||| ||||||
Sbjct: 3254 taagcacttcttcgca 3269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,557
Number of Sequences: 1807
Number of extensions: 21557
Number of successful extensions: 2749
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)