BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZG10RM1.SCF screened BAC_end
         (885 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig185                                                          969   0.0  

>3x_Contig185 
          Length = 1072

 Score =  969 bits (489), Expect = 0.0
 Identities = 505/508 (99%), Gaps = 2/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  cttgtaagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactc 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cttgtaagcaaagcgagaatctttcactggattacagagatatgatggggaaacatactc 152

                                                                       
Query: 105 cgtgcgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgag 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cgtgcgggctgcaaagagtgaatagggtaaaaaaaaagaactcaattcaacggagttgag 212

                                                                       
Query: 165 ttcgaactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaac 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttcgaactttaaaaatttgaccattagcccctgtgatccaatagcatgtagcgtgtaaac 272

                                                                       
Query: 225 tccgtaggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccgtaggataatggtctaatggttttcgacccggtcattccagtgtggatcttttacaa 332

                                                                       
Query: 285 aacagcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataa 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aacagcagttgtttccagggatgttgagttacgttgtatctttcgataatatccctataa 392

                                                                       
Query: 345 ttctcggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgt 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttctcggtatgtatttcattttttttttgatcattcatttttttccttcattgtttacgt 452

                                                                       
Query: 405 tattttgactgaggaaaacaactggctcanaaatgagtgacaagatcattcaaattcgtt 464
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 453 tattttgactgaggaaaacaactggctcaaaaatgagtgacaagatcattcaaattcgtt 512

                                                                       
Query: 465 agtagtggtgataggtttcagtttattgttttg-aaaaaagagacttgtttcaattgaat 523
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 513 agtagtggtgataggtttcagtttattgttttgtaaaaaagagacttgtttcaattgaat 572

                                       
Query: 524 at-aaagggggcctgtaatttctttaaa 550
           || |||||||||||||||||||||||||
Sbjct: 573 ataaaagggggcctgtaatttctttaaa 600


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,879
Number of Sequences: 1807
Number of extensions: 16879
Number of successful extensions: 151
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)