BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZG11RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1263 0.0
>3x_Contig985
Length = 5529
Score = 1263 bits (637), Expect = 0.0
Identities = 722/740 (97%), Gaps = 9/740 (1%)
Strand = Plus / Plus
Query: 58 gtttctcgatgaaatcagggcttttactcaaggcagctattgcgaaaggagctctgcata 117
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3700 gtttctcg-tgaaatcagg-cttttactcaaggcagctattgcgaaaggagctctgcata 3757
Query: 118 aaaatgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 aaaatgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaatc 3817
Query: 178 caataaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 caataaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattatca 3877
Query: 238 tagatggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 tagatggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaaag 3937
Query: 298 acaatactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 acaatactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgcagt 3997
Query: 358 caaaggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3998 caaaggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctcaga 4057
Query: 418 atgttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4058 atgttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggtac 4117
Query: 478 cgtcagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4118 cgtcagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgtac 4177
Query: 538 ccaagataatagctgctcaagatgagaaaagcaggatgctggaaaggctaaagagatttg 597
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4178 ccaagaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatttg 4237
Query: 598 ctagtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagct 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238 ctagtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacagct 4297
Query: 658 attccgatctcaacgccattactaacaaagcttataattttgacaagaacaagcccgatt 717
||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 4298 attccgatctcaacgccatcactaacaaagcttataaatttgacaagaacaag-ccgatt 4356
Query: 718 gtgggggcaaatgtcagtggttagagaaaaaataatttaagacttaccttctgaacccga 777
|||||| ||||||| |||||||||||||| |||||||||||| |||||||||| |
Sbjct: 4357 gtgggg--caatgtcaagtgttagagaaaaaat-atttaagactta-cttctgaaccag- 4411
Query: 778 atccggccaaaagtacgccc 797
|||||| |||||||||||||
Sbjct: 4412 atccgg-caaaagtacgccc 4430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6259
Number of Sequences: 1807
Number of extensions: 6259
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)