BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH01FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1489 0.0
>3x_Contig1742
Length = 17167
Score = 1489 bits (751), Expect = 0.0
Identities = 804/820 (98%), Gaps = 2/820 (0%)
Strand = Plus / Plus
Query: 86 cgacaacctccttccaaatctgtaccgtctagtgctactccgactagtagtgcatcggcg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14340 cgacaacctccttccaaatctgtaccgtctagtgctactccgactagtagtgcatcggcg 14399
Query: 146 agttctgcacggactttgaaaaatcgaccagtacctccaccgacagcatcatcagtgaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14400 agttctgcacggactttgaaaaatcgaccagtacctccaccgacagcatcatcagtgaca 14459
Query: 206 ccgctatccagtactaactctggaagtgcgatgggatcactttcgaacaaattgcacggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14460 ccgctatccagtactaactctggaagtgcgatgggatcactttcgaacaaattgcacggg 14519
Query: 266 ctgaagatcaatacggaccatctgccaacgtctggatcacagcagtcaacccaaagtgca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14520 ctgaagatcaatacggaccatctgccaacgtctggatcacagcagtcaacccaaagtgca 14579
Query: 326 gattcgatgacttccaatctaatatccatgtacgatagcgaaccaacaacaagcagcagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14580 gattcgatgacttccaatctaatatccatgtacgatagcgaaccaacaacaagcagcagc 14639
Query: 386 acaagcctggtaaaccatgggaaagaaagtgaaattatagagcacgatagagatgatagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14640 acaagcctggtaaaccatgggaaagaaagtgaaattatagagcacgatagagatgatagc 14699
Query: 446 acagatgaacttgagtcagatatatggcaaacttacaagatccatgaacaaattgatacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14700 acagatgaacttgagtcagatatatggcaaacttacaagatccatgaacaaattgatacg 14759
Query: 506 ttgggaatattgggcgaaggaactggaggatcggtcacgaaatgtaagttaaggaacggt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14760 ttgggaatattgggcgaaggaactggaggatcggtcacgaaatgtaagttaaggaacggt 14819
Query: 566 tcaaaaatatttgcattgaagaccattgccacgatagagaatgatggctcagagaaacaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14820 tcaaaaatatttgcattgaagaccattgccacgatagagaatgatggctcagagaaacaa 14879
Query: 626 atattcagagaattgcaattcaacaagagttgtaagtctgatttcatagtgaggtattac 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14880 atattcagagaattgcaattcaacaagagttgtaagtctgatttcatagtgaggtattac 14939
Query: 686 gggatgtttgcatgcgaagaaacctcgacaattnttattgcgatggaatatatggngcgg 745
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 14940 gggatgtttgcatgcgaagaaacctcgacaatttttattgcgatggaatatatgggcgga 14999
Query: 746 agatcgctagattcggtgtacaagcaccttctctctaaggggggacgaattggtgagaaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 15000 agatcgctagattcggtgtacaagcaccttctctctaaggggggacgaattggtgag-aa 15058
Query: 806 ggtcctggggaagatagctganagcgtacttaggggaacatttttatctacacgaaagaa 865
||| ||||||||||||||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 15059 ggttctggggaagatagctgagagcgtacttagagg-actattttatctacacgaaagaa 15117
Query: 866 agaacattcatggagatattaagccaccgaacttattgtt 905
||| ||||||| ||||||||||||||| |||| |||||||
Sbjct: 15118 agatcattcatagagatattaagccacagaacatattgtt 15157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5214
Number of Sequences: 1807
Number of extensions: 5214
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)