BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZH01RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1289   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1289 bits (650), Expect = 0.0
 Identities = 698/710 (98%), Gaps = 3/710 (0%)
 Strand = Plus / Plus

                                                                         
Query: 47    aggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagacgcgaaatggc 106
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12579 aggtctaacccatgtcggtaggttcaaagagttgacttggccccaaagacgcgaaatggc 12638

                                                                         
Query: 107   gtttaatggcaacgtactgtaacagaaaaacagccagttattattgaatattttaatacg 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12639 gtttaatggcaacgtactgtaacagaaaaacagccagttattattgaatattttaatacg 12698

                                                                         
Query: 167   atacttccccttcactttatcctgcgaatctccttccaccacatttccagattccgctac 226
             ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 12699 atacttccccttcactttatcctgcgaatctccttccaccacatcgccagattccgctac 12758

                                                                         
Query: 227   ttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacgtaaaactagt 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12759 ttttatcctttggtaatgctgatttatcaagtacgaactaatgattaacgtaaaactagt 12818

                                                                         
Query: 287   cgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaatgggacccga 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12819 cgcgacaacccacttcaccatgcgttttttcgaattctccggtctcacaatgggacccga 12878

                                                                         
Query: 347   tgacataaacctctggctaagcaacatcttcgtcttatttttcaaataaggacctgacac 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12879 tgacataaacctctggctaagcaacatcttcgtcttatttttcaaataaggacctgacac 12938

                                                                         
Query: 407   acgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgttcctagatat 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12939 acgttgtggaacctgtggccacggaatccgcgacattgtcaacgatacgttcctagatat 12998

                                                                         
Query: 467   tccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaagaaaacagtcaaata 526
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999 tccaatcattgcgagtatctaaccaccgacacaaaaattcaaaaagaaaacagtcaaata 13058

                                                                         
Query: 527   attaccttttaccttgtaatcaccaaaaaacacaacacataacacataacactaaccaac 586
             ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 13059 attaccttttaccttgtaatcaccaaaaaacacaacacaaaacacaaaacactaaccaac 13118

                                                                         
Query: 587   agccttatgaaaaccaactactaatacactgcaaactcttttctatcttcta-taccacg 645
             ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13119 agccttaggaaaaccaactactaatacactgcaaactcttttctatcttctagtaccacg 13178

                                                                         
Query: 646   ctaaggacaattttggcgcgctgctccaaattatctctctagaaaatccatgtgccgatc 705
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13179 ctaaggacaattttggcgcgctgctccaaattatctctctagaaaatccatgtgccgatc 13238

                                                               
Query: 706   cttaatacattcttttattcaggaaaacctcttattctaaaagctttttt 755
              | ||||||||| | ||| ||||||||||||||||||| |||||||||||
Sbjct: 13239 ttaaatacattc-tctatacaggaaaacctcttattct-aaagctttttt 13286


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6770
Number of Sequences: 1807
Number of extensions: 6770
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)