BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH02RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig187 934 0.0
3x_Contig1254 264 3e-70
>3x_Contig187
Length = 1332
Score = 934 bits (471), Expect = 0.0
Identities = 510/522 (97%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 44 gcttctttat-ataaatgacccatcaacacctttatccgccccgactaatagaatattgg 102
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gcttctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattgg 644
Query: 103 agcgagtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agcgagtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtca 704
Query: 163 agatcatttgtgataatccatctttcgcatctccgacaagtaaaccctccttattctcat 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 705 agatcatttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcag 764
Query: 223 taaatcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 taaatcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattt 824
Query: 283 tccactcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tccactcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtg 884
Query: 343 cggcaaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 cggcaaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagc 944
Query: 403 ggattattacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctg 462
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ggattagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctg 1004
Query: 463 aattttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaacc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aattttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaacc 1064
Query: 523 aatgctntttgatacgcacccattctaaaagctcgaatatct 564
||| || ||| |||| |||||||||||| | ||| |||||||
Sbjct: 1065 aattcttttttatactcacccattctaatatctctaatatct 1106
>3x_Contig1254
Length = 5494
Score = 264 bits (133), Expect = 3e-70
Identities = 176/189 (93%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 599 tattgctgattcctgttcaagtaccagtgactgtatcttcgatatctcggtagacattgt 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6 tattgctgattcctgttcaagtacaagtgactgtatcttcgatatctcggtagacattgt 65
Query: 659 tccagcttctacttttaaggtcttcagcgtttttagcaattcttcattttcgagaatatt 718
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 cccagcttctacttttaggttctccagcgtttttagcaattcttcattttcgagaatatt 125
Query: 719 actttcagaagaattta-taggcccaatagtcggtttcctatttcccttcatctaacctg 777
||||||||||||||||| || |||||||||| |||||||| |||||| |||||| |||
Sbjct: 126 actttcagaagaatttagaagccccaatagtctgtttcctagttccctcaatctaagctg 185
Query: 778 acaggttga 786
|||||||||
Sbjct: 186 acaggttga 194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7087
Number of Sequences: 1807
Number of extensions: 7087
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)