BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH04FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1598 1289 0.0
>3x_Contig1598
Length = 11902
Score = 1289 bits (650), Expect = 0.0
Identities = 675/682 (98%), Gaps = 1/682 (0%)
Strand = Plus / Minus
Query: 88 aaatatatcgataggacttcatcttcaatctcggtgggcattctggcctcattccatctg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2293 aaatatatcgataggacttcatcttcaatctcggtgggcattctggcctcattccatctg 2234
Query: 148 gtaattgtgtcataactgacatcattctttttccgcataactacattatctggtcagcaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 gtaattgtgtcataactgacatcattctttttccgcataactacattatctggtcagcaa 2174
Query: 208 tgactcatcggttaatattgtccttaacgtagccagagctgatgttatatattaaagact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 tgactcatcggttaatattgtccttaacgtagccagagctgatgttatatattaaagact 2114
Query: 268 acataaggtactagctgcccgttcgttatgaagtgatgcagactgattcatcggctactt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 acataaggtactagctgcccgttcgttatgaagtgatgcagactgattcatcggctactt 2054
Query: 328 aagtacttttgaaatacttaggcgagagttaccctctatttgtgatccttgaaaaatttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 aagtacttttgaaatacttaggcgagagttaccctctatttgtgatccttgaaaaatttc 1994
Query: 388 aatctaaacttcccaattttcaatacaaaaatggtagtccacgctaagttgtaatgatga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 aatctaaacttcccaattttcaatacaaaaatggtagtccacgctaagttgtaatgatga 1934
Query: 448 tcagtatgcattacagttcgcattcacgatacaaagcaacagtcagtaagacgtcatgag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 tcagtatgcattacagttcgcattcacgatacaaagcaacagtcagtaagacgtcatgag 1874
Query: 508 cggtactgctgaggaatccgataaagcagaggctgtttctgtacctgaaacagtttctgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 cggtactgctgaggaatccgataaagcagaggctgtttctgtacctgaaacagtttctgg 1814
Query: 568 gtcagttgagagtcaagataaggagcataactctactttatcttcgtctgattctacaga 627
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1813 gtcagttgagagtcaagataaggagcataactctacttcatcttcgtctgattctacaga 1754
Query: 628 tgtggttggaggcaagaaaagaactatcgatgaagttgatgggagttctgaaaacaactc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 tgtggttggaggcaagaaaagaactatcgatgaagttgatgggagttctgaaaacaactc 1694
Query: 688 tgcatctgtcgatcagttaaaggacgctcctactgattcttaaacaaagacagaagctac 747
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct: 1693 tgcatctgtcgatcagttaaaggacgctcctactgattctaaaccaaagacagaggctac 1634
Query: 748 tgaaaaatagcccaattagggg 769
|| || |||| |||||||||||
Sbjct: 1633 tg-aagatagtccaattagggg 1613
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6338
Number of Sequences: 1807
Number of extensions: 6338
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)