BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH04RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1773 946 0.0
3x_Contig1213 920 0.0
3x_Contig1124 920 0.0
3x_Contig1805 904 0.0
3x_Contig1790 898 0.0
>3x_Contig1773
Length = 8694
Score = 946 bits (477), Expect = 0.0
Identities = 514/525 (97%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 40 ctcaaccttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7454 ctcaagcttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 7513
Query: 100 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 7573
Query: 160 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 7633
Query: 220 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 7693
Query: 280 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 7753
Query: 340 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 7813
Query: 400 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7814 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 7873
Query: 460 tcgtatctaccaaatatataaaataagtgttggttactggatctgccgaaatatctttag 519
||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||
Sbjct: 7874 tcgtatctaccaaatatataaaataggtgttgtttactggatctgtcgtaatatctttag 7933
Query: 520 ctggattttcacttatatttttttgatgaatcggtttatatattg 564
||| || |||||||| |||||||||| ||||||||||||||||
Sbjct: 7934 ctgtatattcacttagtattttttgatg-atcggtttatatattg 7977
>3x_Contig1213
Length = 3226
Score = 920 bits (464), Expect = 0.0
Identities = 510/524 (97%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 40 ctcaaccttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 ctcaagcttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 1185
Query: 100 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 1125
Query: 160 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 219
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 tataatgatttggggtgttttgggattttcactgatcatagctcttagacttaatatttt 1065
Query: 220 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 1005
Query: 280 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 945
Query: 340 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 885
Query: 400 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 825
Query: 460 tcgtatctaccaaatatataaaataagtgttggttactggatctgccgaaatatctttag 519
|||||| ||||||| |||||||||| |||||| |||||||||||| || |||||||||||
Sbjct: 824 tcgtatttaccaaagatataaaataggtgttgtttactggatctgtcgtaatatctttag 765
Query: 520 ctggattttcacttatatttttttgatgaatcggtttatatatt 563
||| || |||||||| |||||||||| |||||||||||||||
Sbjct: 764 ctgtatattcacttagtattttttgatg-atcggtttatatatt 722
>3x_Contig1124
Length = 2635
Score = 920 bits (464), Expect = 0.0
Identities = 510/524 (97%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 40 ctcaaccttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 ctcaagcttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 2130
Query: 100 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 2190
Query: 160 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 2250
Query: 220 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 2310
Query: 280 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 339
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2311 agcaattatcttcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggct 2370
Query: 340 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 2430
Query: 400 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 2490
Query: 460 tcgtatctaccaaatatataaaataagtgttggttactggatctgccgaaatatctttag 519
|||||| ||||||| |||||||||| |||||| |||||||||||| || |||||||||||
Sbjct: 2491 tcgtatttaccaaagatataaaataggtgttgtttactggatctgtcgtaatatctttag 2550
Query: 520 ctggattttcacttatatttttttgatgaatcggtttatatatt 563
||| || |||||||| |||||||||| |||||||||||||||
Sbjct: 2551 ctgtatattcacttagtattttttgatg-atcggtttatatatt 2593
>3x_Contig1805
Length = 19369
Score = 904 bits (456), Expect = 0.0
Identities = 508/524 (96%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 40 ctcaaccttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17993 ctcaagcttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 17934
Query: 100 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17933 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 17874
Query: 160 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 219
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17873 tataatgatttggggtgttttgggattttcactgatcatagctcttagacttaatatttt 17814
Query: 220 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17813 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 17754
Query: 280 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 339
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 17753 agcaattatcatcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggct 17694
Query: 340 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17693 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 17634
Query: 400 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17633 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 17574
Query: 460 tcgtatctaccaaatatataaaataagtgttggttactggatctgccgaaatatctttag 519
|||||| ||||||| |||||||||| |||||| |||||||||||| || |||||||||||
Sbjct: 17573 tcgtatttaccaaagatataaaataggtgttgtttactggatctgtcgtaatatctttag 17514
Query: 520 ctggattttcacttatatttttttgatgaatcggtttatatatt 563
||| || |||||||| |||||||||| |||||||||||||||
Sbjct: 17513 ctgtatcttcacttagtattttttgatg-atcggtttatatatt 17471
>3x_Contig1790
Length = 27369
Score = 898 bits (453), Expect = 0.0
Identities = 508/525 (96%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 40 ctcaaccttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 99
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3890 ctcaagcttggtttttaggcactgcgaacttgtcgctgagcataattcaacttaatccat 3949
Query: 100 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 gttttctggagcctttaacaataaatcctgattatgcactgcttttcattccgtattagg 4009
Query: 160 tataatgatttcgggtgttttgggattttcactgatcatagctcttagacttaatatttt 219
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4010 tataatgatttgtggtgttttgggattttcactgatcatagctcttagacttaatatttt 4069
Query: 220 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 cgattgccttgaggttcaacaaccagtatttcttggttatgatcccacagcctctgtttg 4129
Query: 280 agcaattatcttcgcgtgataacatttatcggaggaagtagatcttttgagaaaaaggct 339
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4130 agcaattatcatcgcgtgataacatgtatcggaggaagtagatcttttgagaaaaaggct 4189
Query: 340 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 tggcacctacgctacctgatatacacaaacagtaagcgatgatgacacgtagcagttcct 4249
Query: 400 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4250 ttaatgtggtccctggcacgaatgtgtaccggtgtcaggtatcaaacactaaacactcat 4309
Query: 460 tcgtatctaccaaatatataaaataagtgttggttactggatctgccgaaatatctttag 519
|||||| ||||||| |||||||||| |||||| |||||||||||| || |||||||||||
Sbjct: 4310 tcgtatttaccaaagatataaaataggtgttgtttactggatctgtcgtaatatctttag 4369
Query: 520 ctggattttcacttatatttttttgatgaatcggtttatatattg 564
||| || |||||||| |||||||||| ||||||||||||||||
Sbjct: 4370 ctgtatattcacttagtattttttgatg-atcggtttatatattg 4413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,220
Number of Sequences: 1807
Number of extensions: 16220
Number of successful extensions: 1927
Number of sequences better than 1.0e-20: 5
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)