BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1126 1162 0.0
>3x_Contig1126
Length = 5421
Score = 1162 bits (586), Expect = 0.0
Identities = 652/670 (97%), Gaps = 3/670 (0%)
Strand = Plus / Minus
Query: 48 ctgaattgatttcaacgtaagaaccggcatatggaatgtcgaagttggacattacttcag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 ctgaattgatttcaacgtaagaaccggcatatggaatgtcgaagttggacattacttcag 4879
Query: 108 gatgtaaaacaccaatatgaccgatctgcctagcttcttctccttctttgtgtctgaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 gatgtaaaacaccaatatgaccgatctgcctagcttcttctccttctttgtgtctgaaca 4819
Query: 168 tgatctttgcacctctacccgggaagtaggtagtgagggtatcatctttttcaatccagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tgatctttgcacctctacccgggaagtaggtagtgagggtatcatctttttcaatccagt 4759
Query: 228 aacctctgccagtggatcccgcaccataatcaggtagccattgagttctgaaagtctgca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 aacctctgccagtggatcccgcaccataatcaggtagccattgagttctgaaagtctgca 4699
Query: 288 taattttccctagtaaaccttgaataatttcaaatgaggcagtttttccgacataagcgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 taattttccctagtaaaccttgaataatttcaaatgaggcagtttttccgacataagcgg 4639
Query: 348 cggcccaatgacgttggttgaatgctcttctttctagtttatcattcttgaaaacaacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 cggcccaatgacgttggttgaatgctcttctttctagtttatcattcttgaaaacaacat 4579
Query: 408 caccggcttcaaaaactttgataggtaaagagtgctttctattttccttaacagttttta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 caccggcttcaaaaactttgataggtaaagagtgctttctattttccttaacagttttta 4519
Query: 468 gaatacctggcaataaactagttctgacaacttggtatttcaaagtctttgggttagcta 527
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4518 gaatacctggcaataaactagttctgacaacttggtattccaaagtctttgggttagcta 4459
Query: 528 attttacagcccttgtgttatcatctttcatccttaggaattt-aagttttcatcatgag 586
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 4458 attttacagcctttgtgttatcatcttccatccttaggaatttaaagttttcatcatgag 4399
Query: 587 agcataaggtcaatggcaaaactttc-accctgaagcctgagagg-agcaatccttagga 644
|||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||| |
Sbjct: 4398 agcataaggtcaatggcaaaacttccaaccatgaagcctgagaggaagcaatccttagaa 4339
Query: 645 tgtctgaaattttgttgataggtaacgccaattcaacgaaatttaccttaaacaattgat 704
|||||||||||||||||||||||||||| || ||||||| || | ||| |||||||||
Sbjct: 4338 tgtctgaaattttgttgataggtaacgcagatgcaacgaagttagcattagacaattgat 4279
Query: 705 tggcttttgg 714
|| |||||||
Sbjct: 4278 tgccttttgg 4269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8850
Number of Sequences: 1807
Number of extensions: 8850
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)