BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH06FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig465 615 e-176
3x_Contig947 268 2e-71
>3x_Contig465
Length = 2281
Score = 615 bits (310), Expect = e-176
Identities = 332/338 (98%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 91 ccaatataagctattccatgagacttttgtttt-aacaatgccgtttattctaccagaag 149
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 338 ccaatataagctattccatgagacttttgttttcaacaatgccgtttattctaccagaag 279
Query: 150 taaactcgctacaactaacacacaaaagatgatgcttaaatctgcaggagttatgcaatt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taaactcgctacaactaacacacaaaagatgatgcttaaatctgcaggagttatgcaatt 219
Query: 210 gaattcttcatttataatcatagatgatgttggtttcaaaaagatggtttttgattcaaa 269
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcttcaaagaaaaacatagatgatgttggtttcaaaaagatggtttttgattcaaa 159
Query: 270 agtacttcaaaccaagaatttcagtttttggaactggcaagtaataggagaattatgcaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 agtacttcaaaccaagaatttcagtttttggaactggcaagtaataggagaattatgcaa 99
Query: 330 gagtccattgatgaacaaaaagagactagatgaattagcaaaaagcactagattcgttcg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gagtccattgatgaacaaaaagagactagatgaattagcaaaaagcactagattcgttcg 39
Query: 390 tagaatgttggtgttctatcgtccttttcgatttagat 427
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 tagaatgttggtgttctatcgtccttttcgatttagat 1
>3x_Contig947
Length = 3468
Score = 268 bits (135), Expect = 2e-71
Identities = 245/267 (91%), Gaps = 11/267 (4%)
Strand = Plus / Plus
Query: 627 attgaacgaaaagctttgtagtgggttattttaagataattttcgggggttttcacagaa 686
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 21 attgaacgaaaagctttgtagtgg-ttattttaagataattttcgggg-ttttcacagaa 78
Query: 687 aattccagtggtttgtcgttccttggagaaatggaatgtattcactgtcatcaacaacat 746
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 79 aattccagtggtatgtcgttccttg-agaaatggaatgtattcactgtcatcaacaacat 137
Query: 747 gtttttcgaaggaatttagcattttctatcaaatattctaatgttagcactttccggaat 806
| ||||||||| ||| ||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct: 138 g-ttttcgaagaaatctagca-tttctatcaaata-tctaatgttagcac-ttccggaat 193
Query: 807 tgaacttccgattttcaagaatgt-agaagttccttaaacaa-gccctactttatgataa 864
||||||||||||||||||| |||| ||| ||||| ||||||| |||||||| ||||||
Sbjct: 194 tgaacttccgattttcaag-atgtaagatgttcc-taaacaaggccctactagatgatag 251
Query: 865 gggaacccttaggattttgccaacaga 891
|| | || ||||||||||| |||||||
Sbjct: 252 ggaagccattaggattttggcaacaga 278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,598
Number of Sequences: 1807
Number of extensions: 14598
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 2
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)