BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH06RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1235 0.0
>3x_Contig1608
Length = 13037
Score = 1235 bits (623), Expect = 0.0
Identities = 749/786 (95%), Gaps = 4/786 (0%)
Strand = Plus / Plus
Query: 42 cttatctggttt-actacggtatttttcttgattggtgaaactatcttttctggtgacag 100
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2351 cttatctggtttcactacggtatccttcttgattggtgaaactatcttttctggtgacag 2410
Query: 101 gttaaattgggtgacagaatcctctggttcttcgaccctaccctcggtatcagttacctg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 gttaaattgggtgacagaatcctctggttcttcgaccctaccctcggtatcagttacctg 2470
Query: 161 cactaattccaatacaaccccatcttttgttatttcaaagagaatggggtcactattttg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2471 cactaattccaatacaaccccatcttttgttatttcaaagagaatggggtcaccaggttg 2530
Query: 221 gcaaaaccagattcttatcatgtcatttgttttccaacaattaagtccatttaagaatac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 gcaaaaccagattcttatcatgtcatttgttttccaacaattaagtccatttaagaatac 2590
Query: 281 tttgaaatctcgtaatttgaacgtaatgctcttcttaatactttgtgatctgcttgaagg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 tttgaaatctcgtaatttgaacgtaatgctcttcttaatactttgtgatctgcttgaagg 2650
Query: 341 tctcgaaccgtcgtttttttctgttgaaaatatgcagtaatgttctagatcatttgcgct 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 tctcgaaccgtcgtttttttctgttgaaaatatgcagtaatgttctagatcatttgcgct 2710
Query: 401 acatgtattcgttactgtaactgcttgtttgaggtacccttgacttttcatgttgtacac 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 acatgtattcgttactgtaactgcttgtttgaggtacccttgacttttcatgttgtacac 2770
Query: 461 ggctttttgtaatcctattatggctagagtatgtctcgtcaattccaattttatttnctc 520
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2771 ggcttttgtaaatcctattatggctagagtatgtctcgtcaattccaattttatttcctc 2830
Query: 521 gatcacattagacataatagagtcaatgaagtttcttagtattgattgatcaaaactaaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2831 gatcacattagacataatagagtcaatgaagtttcttagtattgattgatcaaaacttaa 2890
Query: 581 gaagttgatttcgtcgttaaccgtcaacggtgtatttttcactgtgctcacaatattgtg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 gaagttgatttcgtcgttaaccgtcaacggtgtatttttcactgtgctcacaatattgtg 2950
Query: 641 ttcattggcgatacctctatt-aacatatcatgttctaattctggttggaaagatttgaa 699
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct: 2951 ttcattggcgatacctctattaaacatatcatgttctaattctgtttgtaaagatttgaa 3010
Query: 700 ataatcccttaaccgaggatctaaggatccggccttactttggtggtgggatacggaaag 759
||||||| ||||||||||||||| |||| | ||||||||| || || | |||| |||||
Sbjct: 3011 ataatccactaaccgaggatctaatgatctgcccttacttttgttgttgtatactgaaag 3070
Query: 760 aatttttggtttttttttaaaactt-atttgatttgaacactttccca-ggaacaaaatt 817
| |||| |||| | ||| | |||| || |||| |||||||||||| | ||| |||||||
Sbjct: 3071 gaatttttgtttatatttcagacttaatatgatctgaacactttccaatggatcaaaatt 3130
Query: 818 aacttg 823
||||||
Sbjct: 3131 aacttg 3136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9163
Number of Sequences: 1807
Number of extensions: 9163
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)