BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1365 1025 0.0
>3x_Contig1365
Length = 9349
Score = 1025 bits (517), Expect = 0.0
Identities = 636/670 (94%), Gaps = 5/670 (0%)
Strand = Plus / Plus
Query: 87 ctcgtgatgtagtaatctaaatctattttcttcaagtagatcagagggtatggataatta 146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8501 ctcgtgatgtagtaatctaaatctattttcttcaagtagatcagagggtatggataat-a 8559
Query: 147 tattccttaacacatagagctcaagtttatcaaagttcttatccacagagttttccaaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8560 tattccttaacacatagagctcaagtttatcaaagttcttatccacagagttttccaaca 8619
Query: 207 aagattctagtttggcggtacctattttaatttcgtcagagaaatctttcttcccaatga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8620 aagattctagtttggcggtacctattttaatttcgtcagagaaatctttcttcccaatga 8679
Query: 267 tattcctttgcattaaatacttctccatcgcattagtgcacttgtacataatctcattga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8680 tattcctttgcattaaatacttctccatcgcattagtgcacttgtacataatctcattga 8739
Query: 327 cggcattgataatgtcgtcaactaaagaaattggtggataacccaaatgttccgtcaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8740 cggcattgataatgtcgtcaactaaagaaattggtggataacccaaatgttccgtcaaca 8799
Query: 387 aggacgtactctgcatagttggtgtagtcattggatatttttaaagtgacctcactaagt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8800 aggacgtactctgcatagttggtgtagtcattggatatttttaaagtgacctcactaagt 8859
Query: 447 ggctgtagagtccaggtcacttggagctattctgctctgntctgntntcctgcgtttggt 506
||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
Sbjct: 8860 ggctgtagagtccaggtcacttggagctattctgctctgttctgttttcctgcgtttgtt 8919
Query: 507 gatcttttatgttctggttttattttcgcgaacacttggattattagaaagtgcattcaa 566
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |||
Sbjct: 8920 gatcttttatgttctgtttttattttcgcgaacacttgaataattagaaagtgcatacaa 8979
Query: 567 actgacaaaatattatccaacccgtaactgaattaaagatgggatagaaatagttagtat 626
|||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 8980 actgacaaaatattatacaaccagtaactgaattaaagatggaatagaaatagttagtat 9039
Query: 627 tatttaa-acacatatggctttagaattaa-ttcatattaacaagcctcacttttaataa 684
||||||| |||||||||||| ||||| ||| ||||||| ||| || ||||| |||||| |
Sbjct: 9040 tatttaatacacatatggctctagaaataatttcatataaactagtctcac-tttaatca 9098
Query: 685 ctctcactactggccgtttcacttgaaggctttttcataaaaaatttaatttccatttat 744
|||||||||||| | | |||| || || |||||||||||| ||||| || ||||||
Sbjct: 9099 ctctcactactgtcgctatcac-tggagtctttttcataaataatttcatctccattatc 9157
Query: 745 ttccttgacc 754
||||||||||
Sbjct: 9158 ttccttgacc 9167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8155
Number of Sequences: 1807
Number of extensions: 8155
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)