BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH07RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1140 981 0.0
>3x_Contig1140
Length = 5352
Score = 981 bits (495), Expect = 0.0
Identities = 558/574 (97%), Gaps = 4/574 (0%)
Strand = Plus / Plus
Query: 39 atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 555
Query: 99 actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 615
Query: 159 attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttgg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttgg 675
Query: 219 tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 735
Query: 279 aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 795
Query: 339 gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 855
Query: 399 catgggtttgtattatagcggatgattgcttgnttttaattgtttggttttgttttggaa 458
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 856 catgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttgg-a 914
Query: 459 agggtaaaaaaaaagtctcataagagggggggcgggttgcgctcgagaagatttctgatt 518
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 915 agggtaaaaaaaaggtctcataagagggggggcgggtagcgctcgagaagatttctgatt 974
Query: 519 tattagtcacgtgtatgttcgattaaaggtggaaatggacttgggttattcaaattaagt 578
||| |||||||||||||| ||||||| ||| ||||||||||||||||| ||||| | ||
Sbjct: 975 tataagtcacgtgtatgtccgattaagggt-gaaatggacttgggtta-tcaaaattagg 1032
Query: 579 ttccaatgcctttcaaattattggagatttgaac 612
|| ||||||| ||||||||||| |||||||||||
Sbjct: 1033 ttacaatgccattcaaattatt-gagatttgaac 1065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8862
Number of Sequences: 1807
Number of extensions: 8862
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)