BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH08FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1269 0.0
>3x_Contig913
Length = 2857
Score = 1269 bits (640), Expect = 0.0
Identities = 725/747 (97%), Gaps = 5/747 (0%)
Strand = Plus / Minus
Query: 87 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 1967
Query: 147 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 1907
Query: 207 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 1847
Query: 267 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 1787
Query: 327 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 1727
Query: 387 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 1667
Query: 447 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 1607
Query: 507 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 1547
Query: 567 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 1487
Query: 627 aaatcattggagataggtcgttattaccggctgacgttttgaaagaa-tggagttagcga 685
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1486 aaatcattggagataggtcgttattaccggctgacgttttgaaagaagtggagttagcgg 1427
Query: 686 aagnaattactatgaattattcaagggcagtattgaacatatgcttcccat-ttcaggga 744
||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1426 aagaaattactatgaataattcaagggcagtattgaacatatgcttcccatatacaggga 1367
Query: 745 aagaaaagaatcg-gcattcattacggggaattatgaaaagaaccgccattgggggaaat 803
|||| || |||| ||||||| ||| |||||| |||||| ||| |||| ||||||||||
Sbjct: 1366 gagaagag-atcgtgcattcaatacagggaataatgaaagaaacggcca-tgggggaaat 1309
Query: 804 tgattttagaaactttgcccaacaaac 830
||||| |||| || ||| | |||||||
Sbjct: 1308 tgattatagagacattgacgaacaaac 1282
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6456
Number of Sequences: 1807
Number of extensions: 6456
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)