BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH08RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1407 862 0.0
>3x_Contig1407
Length = 9823
Score = 862 bits (435), Expect = 0.0
Identities = 588/630 (93%), Gaps = 8/630 (1%)
Strand = Plus / Minus
Query: 44 gctttctacatcgcccctactttgtgaagccgattcgtctgtttcctatttcactagaag 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3755 gctttctacatcgcccctacttcgtgaagccgattcgtctgtttcctatttcactagaag 3696
Query: 104 actatttttcttgatgtgcgacttgctacaattgggctcagagaaggatgctaagcgaaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3695 actatttttcttgatgtgcgacttgctacaattgggctcagagaaggatgctaagcgaaa 3636
Query: 164 tccaatggtggcgcattgtctcgcaaaatttccgcagtcacatttcaagcttcaagttga 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3635 tccaatggtggcgcattgtctcgcaaaatttccgcagtcacatttcaagcttcaagttga 3576
Query: 224 ttatttttatgttgcttgctcattggatgcggatgctttcttggagaaattgtcggactt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3575 ttatttttatgttgcttgctcattggatgcggatgctttcttggagaaattgtcggactt 3516
Query: 284 tatcaaaagaaagcactcaggtatctctcatattagaatgataacggatggattttgtat 343
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3515 tatcaaaagaaagcactcaggtatctctcatattagaatgataagggatggattttgtat 3456
Query: 344 ttattttaacaatgctaccatgcacaacaccaaagacagaattatgacaaggattgatga 403
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 3455 ttattttaataatgctaccatgcacaacaccaaagagagaattatgataaggattgatga 3396
Query: 404 ttttttgaaagataccgcatgcgagatggcgaacattcttttgagtgaatcaaatttgtt 463
||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct: 3395 ttttttgaaagataccgcatgcgagatggcgaaaatttttttgagtgaataaaatttgtt 3336
Query: 464 cgatgaacatgcgtctgaagtggtagatagcatctttgagctg-aaccaggagattattc 522
|||||| |||||| ||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 3335 tgatgaaaatgcgtatgaagtggtagatagtatctttgagctgaaaaaaggagattatta 3276
Query: 523 caaa-gctatcaaaaa--ttcatttaacgcatcttcgctttcatcatcttttccagcgtt 579
||| | ||| ||||| | |||||| |||||| ||||| ||| ||||| || ||||||
Sbjct: 3275 taaaggatataaaaaaattaaatttaaagcatctgcgcttccattatcttctcgagcgtt 3216
Query: 580 tatgaattttttct-acgaaca-gtgattgt-taccaaccttggaatcgacatttactac 636
|||||||||||| | ||||||| ||||| || |||||||| | ||||||||| ||||||
Sbjct: 3215 tatgaattttttttcacgaacaggtgatagtacaccaacctcgaaatcgacatctactac 3156
Query: 637 ttcttcatcggcatt-tcttcagttgaggg 665
|||||||||| |||| ||| ||||||||||
Sbjct: 3155 ttcttcatcgtcattatctccagttgaggg 3126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9012
Number of Sequences: 1807
Number of extensions: 9012
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)