BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH09RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1433 1213 0.0
>3x_Contig1433
Length = 8270
Score = 1213 bits (612), Expect = 0.0
Identities = 753/791 (95%), Gaps = 7/791 (0%)
Strand = Plus / Plus
Query: 53 ctttacagttccatttacatggacgattttacagacttaactaaacgacattcatcttgg 112
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 ctttacagt-ccatttacatggacgattttacagacttaactaaacgacattcatcttgg 2427
Query: 113 gataaacatccacagatcatatttgagataggtttaaggtctcaagaatctgatcctgct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 gataaacatccacagatcatatttgagataggtttaaggtctcaagaatctgatcctgct 2487
Query: 173 gaatgctcattgaatttgcatgtagttctcccgtctacttatcctcatgcagctcctcat 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 gaatgctcattgaatttgcatgtagttctcccgtctacttatcctcatgcagctcctcag 2547
Query: 233 attacattcaagaatgtaataaatgtgccagatggccaactgaataagctcaggcaggaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 attacattcaagaatgtaataaatgtgccagatggccaactgaataagctcaggcaggaa 2607
Query: 293 atcaaagaaatacatcaaagatctaaagggcaagaaatcatatatgaaatcattattgca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 atcaaagaaatacatcaaagatctaaagggcaagaaatcatatatgaaatcattattgca 2667
Query: 353 acgcaagatgtcctataagattcgcagaaacatgtggtaactgattctttataggatcag 412
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2668 acgcaagatgtcctagaagattcgcagaaacatgtggtaactgattctttagaggatcag 2727
Query: 413 atgctgcagcggatcagatatgaagaggctcgaatgaaactcgaagaagatcaaagacaa 472
| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2728 aggctgcagcggatcagagatgaagaggctcgaatgaaactcgaagaagagcaaagacaa 2787
Query: 473 aaaatgattgaaaaacagaagatgcatgatcagatattgattgacgaagtgttccaaana 532
|||||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |
Sbjct: 2788 aaaatgattgaaaaacagaagatgcaggaacagaaattgattgacgaagtgttccaaaaa 2847
Query: 533 gaactagctaagagaatggatgatgaagtgctcgaa-tcagtaacgataaggagattgat 591
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2848 gaactagctaagagaatggatgatgaagtgctcgaattcagtaacgataaggagattgat 2907
Query: 592 ttattgccgcctgccgaattgacctcttc-gggcatgcgttcgtttttccac-actcatc 649
||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 2908 ttattgccgcctgccgaattgacctcttcggggcaggcgttcgtttttccacaactcatc 2967
Query: 650 acagcatagctacctaataactcgcagtataaattcagagctggtattcaacctcaatca 709
|||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2968 acagcaaagctacctaataactcgcagtataaattcagagctgttatacaacctcaatca 3027
Query: 710 attattttatgtgacgattcgctttctttcgcatcccatatgctggtt-aaccatttatt 768
|||| ||||||||||||| |||| |||||||||||||| ||||| ||| |||||||||||
Sbjct: 3028 attaatttatgtgacgatccgctatctttcgcatcccagatgcttgttaaaccatttatt 3087
Query: 769 tccgttg-atcaccactttat-atgttttgaaatctttggaatcactggacagcatctat 826
| | || ||||||||| ||| ||||||||||||||| ||| ||| |||||||| |
Sbjct: 3088 ccggctgaatcaccactatataatgttttgaaatcttcggatcaacttgacagcattcaa 3147
Query: 827 taccttttgac 837
|||||||||||
Sbjct: 3148 taccttttgac 3158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7623
Number of Sequences: 1807
Number of extensions: 7623
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)